Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02929 ATGATGCATATTCTAAATCAAATTGGGAGATGGTTGATGCAGCCAAAGGTTTGGAGATTTATAGGCTTCGCATCAGCTGTTGTTGGATTGCTCTGTTATGCTCTAAGCTCTTCCTTCAACTATCTCTTTGGAGATTGGAATTTGCtgaaaatatttctttattgtgTTTTCAGTTTCATCATATGCTTGgttattttatttgcaaaattATTTCAACATTCAAGAAGTCTCCGCTTCAAAGCTCATACAGCATTTTTGGTATTGACAATCACATCTGTTTATTCCTTTTTCTTCGATAAAGTGATGAATGGAAAACCAGATGCATATAGCTTGATTTCATGTACTGCTTTTGCTATAATGTCACTCAGTTTGTCGAGGCAAACTCAGTGCGGATTTGAAATCGATCTTCTTTATTTCTTCCTCGGATGTCTAATTGTGCAACTCATGAAGATTAAATTGCAATTATTCATTCTTGGAGCAGGTTTCAGCTATACTCTTATTATTCTCCGTTCGTTTTTATCTTCTATTGATGCTAGAGTAGATGATCAATATTCTCAACTCCAAGATGGAAACTCGGTGGTTCTTTATATGGATTCTCTACAAATGACTAATACGGATATTGCTAGTGCTAGTGCTAGCAGAAGCAATAGCATTGATTCACCACAATTGGTGATCACTACTGATATTAGTAGTGTGATGGAACAACTCGGAACTTTTGTGAAGGCGCTTCAACAAGAAAATTTAAATCTCGTTCAGATGCTCTTGGATCATGTAAAAAACTATTGTGAAGAACGCTCTCCATTGGTGGCGACCGATCCTAACTTCATCATGGATGCGCTGAAGCCAGAAACAATCAAAGGCCTGGAGGAAACAGCGAAGGTTATGGTGAGTGCTGGCTTTGAGAAGGATTTTTCTGATTTGTACAACAGTTGCCGGAGGGAATGCTTGGACAATTGCCTAATGCGTAGTTTATTCAGGTTAAAGAAGCTTAGCAGCGAGGACGTTCAAAATTTGCCGTGGAAGGATTTTGAAGACGACATTAAAAGATGGACTAGATCTTTCAATGTCACCCTCAAGATACTTTTCCCTGGTGAGAGACAACTCTGTGATCGTGTCTTCTCCGGGTTCTCATCTGCCGCTGATTTCTCCTTCATTGAGATTTGCAGGGTATCCACCACTCAACTTCTAAATTTTGCAGACTTTATCGCATCCGTAAGTCGTTCACCAGAGTGTTTGTTTAAAATCATCGAGGTGTTTGAAACATTTCGTGACCTAATTCCAGATTTTGAGTCCTTGTTTTGTGATCAATACAGCGTGTCTCTAAAGAATGAAGCAATTTCCATATGGAAGAAAGTTGGGATAGCAATTAGAAGTATTTTCATGGAATTGGAGTATTTGATTGACCAAAACATGACGACGGGGACATATATCAGCAGCGGTCTTCACCCGATTACCCAACATGTGATGAACTACCTCCGTGTAGTTTCCAAATCTCGACAAACACTAGAGCAAGTGTTTGACGATTCCTCATTTTCTGGGAAGATTCTTAATATTATGGATGTATTGGAGAGTAAATTGGAAGCAAAGGTCAAATGCTACGAGGATCCTTCTTTAGGCTATATTTTCTCGATCAATAATGCCACTTATATAGTTCAGATGACCAAAGATAATGAACTAGGAACCCTTTTAGGGGATGAATGGTTCCGAAAACGCACTTTGAAAATTTGGCACTACCATGAACAATATCAGAAAACCTTGGGCACTATGCCCCCCACTTTAATGCAAGATATTTTCCCATTATTTTACAACAAACACCAGATTGATAAAATACATGAGTGGAAAGGTTCAAAAGGATCAAAGGCGTACAAAGGAAATCTGCATGAAATAGAAGCATCACTCTCTCAGCTACCAAAAAGGAAAATGGAACCTGGCATGGAGATGAGAACAATAGTAGTGATCTCTCCTGCAACGCACGTAGGAACAATAGATAAAATGCCACCGAATGACGGATTTATCTGGAGGAAATATGGGCAGAAAGAGATACTTGGCTTCAAATACTCGAGgAGTTACTATAGGTGCAGCCTCATGAATTTAGATGCCTGTCGAGCCAAGAAGAAAGTACAACAACTTGGTGACAATCCAAATGTGTTTGATGTAACATACAATGGTGCACATTCCTGCCGTATGTTCTTGACAATACCATCCTTATTTTTAACAGCACGAAGGATCTCAAAGGATATGCCTCAAACCACCATGCCGGCATCAACTTCCTATTCTGAGTGGCTTTCATCGGGCACGCCAGCTAAATACATAGACTCCATCCCAACGGCGAGGCTAGCTGCTCCGGAAGATGGTGGGCATCATCCTATGATGGACAATGTCGGGGACTATCTTGTTTCTGCTATCAGAACACAGCAGATTGTTTCTGCTATCAGATCACAGCAGATCTATGTTGTTAATGGAGACGAATTTTCACCACAAGTGGAGGGCACAGTGGAACTGTTAGAGAGCATATTGGCATCAAAGTCCGAAAAATATGTGGACGCGTCTTTGCGTCATTTCTTCATGATGAATAATTGGAGGTATTTAGAAGTGACAAATAATAGAATGGAACTAGATGGAATGTTCGGCGATGTTTGGTTgcaaagaaatagagaaaaagtCCAACAAAAACTTGAACTCTATAAGAGAGACTCATGGGATAAGGTGTTGGAATTTTTAAAGTTGGATGTTATCGATGACTCCATGGAAATTAATATTGCAACAGATCTGATGAAAGAAAACCTCAATTTGTTTAACATGCAATTTAAAGAAACAATTAGAGTTCAGTGCACATGGTCTGTTCATGATGAGAAGCTAAGGGAAGAAATAATTGAATCTCTCAAAAACACTTTGTTGCCAGCATATGGAACCTTCATTGGGAAGTTTCAGGATTTTCTTAAAAGCAATGCTTACAAGTATATTGAGTATGGAATGTTTGATATTCAAGATGTACTTGATAGTTTGTTTCTTGGAAACAAAAAATACAGATGA 3033 0.3844 MMHILNQIGRWLMQPKVWRFIGFASAVVGLLCYALSSSFNYLFGDWNLLKIFLYCVFSFIICLVILFAKLFQHSRSLRFKAHTAFLVLTITSVYSFFFDKVMNGKPDAYSLISCTAFAIMSLSLSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYTLIILRSFLSSIDARVDDQYSQLQDGNSVVLYMDSLQMTNTDIASASASRSNSIDSPQLVITTDISSVMEQLGTFVKALQQENLNLVQMLLDHVKNYCEERSPLVATDPNFIMDALKPETIKGLEETAKVMVSAGFEKDFSDLYNSCRRECLDNCLMRSLFRLKKLSSEDVQNLPWKDFEDDIKRWTRSFNVTLKILFPGERQLCDRVFSGFSSAADFSFIEICRVSTTQLLNFADFIASVSRSPECLFKIIEVFETFRDLIPDFESLFCDQYSVSLKNEAISIWKKVGIAIRSIFMELEYLIDQNMTTGTYISSGLHPITQHVMNYLRVVSKSRQTLEQVFDDSSFSGKILNIMDVLESKLEAKVKCYEDPSLGYIFSINNATYIVQMTKDNELGTLLGDEWFRKRTLKIWHYHEQYQKTLGTMPPTLMQDIFPLFYNKHQIDKIHEWKGSKGSKAYKGNLHEIEASLSQLPKRKMEPGMEMRTIVVISPATHVGTIDKMPPNDGFIWRKYGQKEILGFKYSRSYYRCSLMNLDACRAKKKVQQLGDNPNVFDVTYNGAHSCRMFLTIPSLFLTARRISKDMPQTTMPASTSYSEWLSSGTPAKYIDSIPTARLAAPEDGGHHPMMDNVGDYLVSAIRTQQIVSAIRSQQIYVVNGDEFSPQVEGTVELLESILASKSEKYVDASLRHFFMMNNWRYLEVTNNRMELDGMFGDVWLQRNREKVQQKLELYKRDSWDKVLEFLKLDVIDDSMEINIATDLMKENLNLFNMQFKETIRVQCTWSVHDEKLREEIIESLKNTLLPAYGTFIGKFQDFLKSNAYKYIEYGMFDIQDVLDSLFLGNKKYR 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02929 1010 Pfam WRKY DNA -binding domain 668 728 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02929 1010 PANTHER EXOCYST COMPLEX PROTEIN EXO70 783 1003 IPR004140 GO:0000145|GO:0006887
Tsu05g02929 1010 SUPERFAMILY Cullin repeat-like 775 1003 IPR016159 -
Tsu05g02929 1010 Gene3D Exocyst complex component Exo70 769 1010 - -
Tsu05g02929 1010 Gene3D Exocyst complex component Exo70 218 620 - -
Tsu05g02929 1010 SUPERFAMILY WRKY DNA-binding domain 663 728 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02929 1010 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 585 IPR004140 GO:0000145|GO:0006887
Tsu05g02929 1010 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 783 1003 - -
Tsu05g02929 1010 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 24 585 - -
Tsu05g02929 1010 SMART WRKY_cls 667 729 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02929 1010 SUPERFAMILY Cullin repeat-like 222 605 IPR016159 -
Tsu05g02929 1010 ProSiteProfiles WRKY domain profile. 668 726 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02929 1010 Gene3D WRKY domain 657 729 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02929 1010 Pfam Exo70 exocyst complex subunit 778 1000 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02929 1010 Pfam Exo70 exocyst complex subunit 348 598 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02929 Tsu-Chr5 39703636 39708787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02929 271 585 EXO70 exocyst subunit family AT5G58430 54.630 2.14e-105 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g02929 Exo70 1.5e-59 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02929 - - cam:101500706 1179.85