Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02927 ATGTTATTCTCATTCTGTCTGAAATCAATTCTTACACACTTTAGACAACATGATGCATATTCTAATCCAAATTTGGAAATGGTTGATGCAGCCAAAGATGTTGTAATAGATAATGAAGATCCCACTAGTCTCCAAGATGAAAATCTGGTAATTATTGAAGTCTGTTCAGATTCAATGCAACTAACCAGTACCGATATTGGTAGAAGTATGGTGGAACAACTCAGTAATTATGTGAAGGCACTTCGGCAAGAAAGTTCAAATATCTTCGAAAAGCTTAGCGATTATTCAGGATTTTTTATGTCTGACCCTGACTTCATGATCAAGGCCTTGCCAACTGAAACAATCGACAACCTTCACAAAACAGCCAAGTTGATGGTTAGTGCTGGGTTTGAGAAGGACTTCTCCGACATGTATATCAGTTGCCGGATGGAATGTTTGGTAGAAAGCCTTACAAGGTTAGGGTTCAAGAAACTCAACATCGAAGACATTCAGATGTTGTCATGGAAGGAAATTGAAGACGATGTTGAAAGATGGATTAAAGCTTACAAAGTGGCTTTGAAGATATTGTTCCCAACTGAGCGAAGATTATGTGATCGGGTTTTCTTTGATGTCTCCTCCACCGGTGATTTATCATTTGTGGATGTTTGTAGGGAATTCACGCTTCAGATGCTGAATTTTGCCGATGCAATTGCCATTGGAAGCAGATCACCTGAGCGGTTGTTTAGCGTCATTGACATGTTTGAAACAATGCGTGACCTCATTCCAGAGTTTGAGTCACTGTTCCGCGACCAATACACTGTCACTGCAAAATGA 813 0.3973 MLFSFCLKSILTHFRQHDAYSNPNLEMVDAAKDVVIDNEDPTSLQDENLVIIEVCSDSMQLTSTDIGRSMVEQLSNYVKALRQESSNIFEKLSDYSGFFMSDPDFMIKALPTETIDNLHKTAKLMVSAGFEKDFSDMYISCRMECLVESLTRLGFKKLNIEDIQMLSWKEIEDDVERWIKAYKVALKILFPTERRLCDRVFFDVSSTGDLSFVDVCREFTLQMLNFADAIAIGSRSPERLFSVIDMFETMRDLIPEFESLFRDQYTVTAK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02927 270 Pfam Exo70 exocyst complex subunit 176 264 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02927 270 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 264 IPR004140 GO:0000145|GO:0006887
Tsu05g02927 270 SUPERFAMILY Cullin repeat-like 87 264 IPR016159 -
Tsu05g02927 270 Gene3D Exocyst complex component Exo70 28 270 - -
Tsu05g02927 270 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 44 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02927 Tsu-Chr5 39698160 39699243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02927 100 265 EXO70 exocyst subunit family AT5G58430 63.253 5.37e-72 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02927 K07195 - mtr:MTR_5g073620 234.572