Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02896 ATGGGAAAGTTTTGGCTTATTGGGATTTTCATTGTAGCGACCTATGTCTTAGGAACAACAACAAGTGTTAGGGTAGTAGAAGGGTACCCAATTGAGGATCTGATTGTTAGTTTACCAGGACAACCTAAAGTTGAATTCAGTCAATATGCTGGCTATGTTGATATTGATGTCAAACATGGTAGAAGTCTCTTCTATTATTTTGTTGAGGCTGACCATCAACCTCATAAAAAACCTCTCACCCTTTGGCTCAATGGAGGTCCAGGATGTTCATCCATTGGAGGAGGTGCTTTTACTGAATTGGGTCCGTTTTTCCCCAAGGGTGATGGACGCGGTCTACGAAAAAATTCAATGTCATGGAATAGagCTTCCAATCTCCTCTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAGCTTCCGATTATAACATCGGTGACGCCTCCACAGCTAATGACATGCTTTTGTTCTTCCTGAAATGGTACGAGAAGTTTCCTACCTACAAATCAAGAGAGTTGTTTCTTACCGGAGAAAGCTATGCAGGACATTACATACCTCAGTTAGCTAATGCTATTCTTGATTATAATGCTCATTCAACCGGTtacaaattcaaattgaaaGGAGTTGCTATTGGAAACCCACTTTTGAATCTTGACCGTGATTCGCAAGCAACATATGACTACTTCTGGTCACACGGAATGATTTCTGATGAAATTGGCCTTGCCATTACGAAGGATTGCGATTTTGATGATTATACTTTTGCATCTCCTCATAATGTATCTGAATCATGCAACAATGCCATTAGTGATGCTAATAAAATTGTTGGAGATTATATTAACAATTATGATGTGATTCTCGATGTTTGTTATCCATCCATTGTTCAACAAGAATTGAGATTGAAAAAAATGGCTACTAAAATAAGTGTAGGGGTAGATGTCTGTATGAGTTATGAAAGACGTTTTTACTTCAACCTTCCTGAGGTTCAAAAGGCTCTTCATGCAAACCGTACCAATTTGCCGTATCCATGGTCCATGTGCAGTGGTGTTTTAAATTACAGCGATACAGATCCTAACATTAATATGCTTCCAATTCTCAAACGGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATCCGTGAACTAGCGCACGATCTGAAGTTCAAGATTACAGTCCCATATGGTGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACTGAGTATGGAAATTTGTTAACTTTCGCCACCGTAAGAGGAGCAGCGCACATGGTACCATATGCACAACCTTCTAGAGCACTGCATCTATTCAGTTCCTTTGTGAATGaATGGCGTGGCGGACAGATGGGTGTGGAAGCTCCACCCGTCCCAGTGTTACTCTTTTTTCACGGGACTACAAGTTTACACTCTTCACAGTTTCGTGATCTTGGAGGCTACAAAATGTTCAAGGACTGCGTTTACCATCATATGGATCTCGCATCCTATATTAAGGTAGTAGAAGGGTACCCAATTGAGGATCTGGTTGTTAGTTTACCAGGACAACCTAAAGTTGAATTCAGTCAATATGCTGGCTATGTTGATATTGATGTAAAACATGGTAGAAGTcttttctattattttgttgAGGCTGACCATCAACCTCATAAAAAACCACTCACCCTTTGGCTCAATGGAGGTCCAGGATGTTCGTCCATTGGAGGCGGTGCTTTTACTGAATTGGGTCCGTTTTTTCCTAATGGTGATGGACGCAGTCTACGAAAAAATTCAATGTCTTGGAATAGAGCTTCCAATCTCCTCTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAGCTTTTGATTATAACATCGGTGACGCCTCCACAGCCAATGATATGCTTTTGTTCTTCCTGAAATGGTACGAGAAGTTTCCTACCTACAGATCAAGAGAGTTGTTTCTTACGGGAGAAAGCTATGCAGGACATTACATACCTCAGTTAGCTAATGCTATTCTCGATTATAATGCTCATTCAACCGGTTATAAATTCAAATTGAAAGGAGTTGCTATTGGAAACCCACTTCTGAATCTTGACCGTGATGCACCAGCAATGTATGACTACTTCTGGTCACACGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAAGGATTGCGATTTTGATGATTATACTTTTGTAACTCCAAATAATATATCTGATTCATGCAACAATGCCATTAATGATGCTACTAAAATTGTTGGAGATTATATAAACAACTATGATGTGAGTCTCGATGTTTGTTATCCATCCATTGTTCAACAAGAATTGAGATTGAAAAAGAtgGCTACTAAAATAAGTGTAGGAGTAGATGTATGTATGACTTATGAAAGTAGTTTTTACTTCAACCTCCCGGAGGTTCAAAAGGCTCTTCACGCAAACCGTACCAATTTGCCGTATCCATGGTCCATGTGCAGTGGTGTTTTAAATTACAGCGATACAGATCCTAACATTAATATGCTTCCAATTCTCAAACGGATTGTTCAAAACCATATTCAAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTATACCATTACTAGGTTCTCGAACACTCATCCGTGAACTAGCGCACGACCTGAAGTTCAAGATTACAGTCCCATATGGTGCTTGGTTCCACAAAGGCCAGgTTGGAGGTTGGGTAACTAAGTATGGAAATTTGTTAACTTTTGCCACCGTAAGAGGAGCAGGACACATGGTACCATATGCACAACCTTCTAGAGCACTGCATCTATTCAGTTCCTTCGTGAACGGTAGGAGATTGCCGAACACAACTCGACCTTCAATTGGTGGATGA 2904 0.4019 MGKFWLIGIFIVATYVLGTTTSVRVVEGYPIEDLIVSLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADHQPHKKPLTLWLNGGPGCSSIGGGAFTELGPFFPKGDGRGLRKNSMSWNRASNLLFVESPAGVGWSYSNTASDYNIGDASTANDMLLFFLKWYEKFPTYKSRELFLTGESYAGHYIPQLANAILDYNAHSTGYKFKLKGVAIGNPLLNLDRDSQATYDYFWSHGMISDEIGLAITKDCDFDDYTFASPHNVSESCNNAISDANKIVGDYINNYDVILDVCYPSIVQQELRLKKMATKISVGVDVCMSYERRFYFNLPEVQKALHANRTNLPYPWSMCSGVLNYSDTDPNINMLPILKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVNEWRGGQMGVEAPPVPVLLFFHGTTSLHSSQFRDLGGYKMFKDCVYHHMDLASYIKVVEGYPIEDLVVSLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADHQPHKKPLTLWLNGGPGCSSIGGGAFTELGPFFPNGDGRSLRKNSMSWNRASNLLFVESPAGVGWSYSNTAFDYNIGDASTANDMLLFFLKWYEKFPTYRSRELFLTGESYAGHYIPQLANAILDYNAHSTGYKFKLKGVAIGNPLLNLDRDAPAMYDYFWSHGMISDEIGLAIMKDCDFDDYTFVTPNNISDSCNNAINDATKIVGDYINNYDVSLDVCYPSIVQQELRLKKMATKISVGVDVCMTYESSFYFNLPEVQKALHANRTNLPYPWSMCSGVLNYSDTDPNINMLPILKRIVQNHIQVWVFSGDQDSVIPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTKYGNLLTFATVRGAGHMVPYAQPSRALHLFSSFVNGRRLPNTTRPSIGG 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02896 967 SUPERFAMILY alpha/beta-Hydrolases 36 462 IPR029058 -
Tsu05g02896 967 Gene3D - 363 461 - -
Tsu05g02896 967 Gene3D - 855 954 - -
Tsu05g02896 967 PANTHER CARBOXYPEPTIDASE 515 961 - -
Tsu05g02896 967 Pfam Serine carboxypeptidase 40 461 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 Pfam Serine carboxypeptidase 532 954 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 515 961 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 ProSitePatterns Serine carboxypeptidases, histidine active site. 924 941 IPR033124 GO:0004185
Tsu05g02896 967 SUPERFAMILY alpha/beta-Hydrolases 518 961 IPR029058 -
Tsu05g02896 967 Gene3D alpha/beta hydrolase 523 784 IPR029058 -
Tsu05g02896 967 Gene3D alpha/beta hydrolase 31 292 IPR029058 -
Tsu05g02896 967 PRINTS Carboxypeptidase C serine protease (S10) family signature 924 937 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Tsu05g02896 967 Gene3D - 808 844 - -
Tsu05g02896 967 Gene3D - 316 352 - -
Tsu05g02896 967 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 464 IPR001563 GO:0004185|GO:0006508
Tsu05g02896 967 ProSitePatterns Serine carboxypeptidases, serine active site. 669 676 IPR018202 GO:0004185
Tsu05g02896 967 PANTHER CARBOXYPEPTIDASE 8 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02896 Tsu-Chr5 39356692 39367921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02896 813 957 Calmodulin-binding Proteins AT2G22960 25.517 1.37e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02896 K16297 - gmx:100815723 834.328