Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02880 ATGCTTCCTAGAAAGAGAGCTAGTGAAGGAGAAGTTGTTGTAGAAGAAGagattaacaacaacaacagtaacaaCAACAGTAGCAACAGCGCGTGTTCTGCTAAGAAGGTTCGGATCGGTTGTATCGCAGCTTGCTCGGGTGAATCGACGGTGAACGAGAGTGACTTGAGCTTCAGTAGCGGCggaaataataatagtaacagtAGTAGCTCAGGGAATTTGATTGCAGCGTCCAGTATGGCTTTTGGAAATTCTAACCCGCAGGAAATTGATGAGGATCTCCACAGCCGTCAGCTTGCTGTGTATGGACGTGAAACTATGAGGAGGCTTTTTGCTTCTAGTGTTCTTGTTTCGGGGATGCGGGGACTTGGTGCTGAGATTGCGAAGAATCTTATTCTGGCTGGTGTAAAATCTGTAACCTTGCACGATGAAGGGAATGTCGAGTTATGGGATTTGTCCAGCAATTTTGTGTTTTCAGAAAATGATATTGGTAAAAACAGGGCAGCGGCTTCTGTCAGTAAGTTACAGGAACTCAATAACGCAGTGCTTGTACTAAGCTTGACAACAAAGCTGACAAAAGAACAACTTTCTAACTTCCAGGCCGTTGTTTTTACCGAAATCAGTCTTGAGAAAGCTGTTGAGTTCAATGATTACTGCCACAGTCATCAGCCTCCTATTGCTTTTATTAAGACTGAAGTTAGAGGCCTTTTTGGTGCTGTGTTTTGTGACTTTGGACCTGAGTTTACTGTTTTTGATGTTGATGGAGAGGAACCCCATACTGGAATAATTGCATCTGTCAGCAATGACAACCCTGCTCTTGTATCTTGTGTTGATGATGAGAGACTTGAGTTTCAGGATGGAGACCTTGTTGTCTTCTCGGAGGTTCATGGTATGAAAGAGTTGAATGACGGAAAACCAAGAAAGATTAAAAATGCTAGGGCATATTCATTCACTCTTGAAGAAGACACCACAAACTATGGTGCCTATGAAAAAGGTGGTATTGTCACACAGGTCAAACAACCAAAGGTTTTGAACTTCAAACCACTAAGGGAAGCACTCAGTGATCCAGGTGAATTTCTTCTAAGTGATTTTTCGAAGTTTGACCGTCCACCTCTACTGCATTTAGCATTCCAGGCTTTGGACAAGTTTATTTCCGAGATAGGTCGCTTTCCTGTCGCTGGCTCAGAGGATGATgcacaaaaatttatttctattGCCAATGATATTAATGGAAACTTAGGTGATGGAAGGTTGGAAGATGTGAATCCAAAACTTCTACAGCAATTTGCCTTTGGTGCTAGGGCAGTATTGAACCCTATGGCTGCCATGTTTGGTGGAATTGTAGGACAAGAGGTTGTGAAGGCATGCTCTGGGAAATTTCATCCACTTTTTCAGTTTTTCTACTTCGACTCCGTGGAATCACTTCCTACAGAACCGTTGCATCCTAATGATTTAAAACCAATAAATAGTCGTTATGATGCACAGATTTCAGTTTTTGGGCAAAAGTTAcagaagaaatttgaagatgctCAAGTGTTTGTTGTTGGATCTGGTGCACTGGGAtgtgaatttttgaaaaatcttgcTCTAATGGGAGTCTCTTGTGGAGGTCAGGGGAAGCTGACAGTTACTGATGATGATGTCATAGAGAAGAGTAACTTAAGTAGGCAGTTCCTCTTTCGTGATTGGAATATTGGCCAGGCCAAGTCTACTGTTGCTGCTTCAGCTGCTGCATCTATAAACCCTCGACTGAATATTGAAGCTCTACAAAATCGTGTTGGCCCTGAAACTGAAAATGTGTTTCACGATACCTTTTGGGAAAACTTGAGTGTTGTGATTAATGCACTAGACAATGTGAATGCAAGACTATATGTTGATCAAAGATGCTTGTATTTCCAGAAACCCCTTCTTGAATCTGGAACACTTGGAGCTAAATGCAATACCCAGATGGTCATTCCCCACCTAACAGAAAACTATGGAGCCTCAAGAGATCCACCTGAGAAACAAGCTCCAATGTGTACTGTGCACTCATTTCCACACAACATTGACCACTGCTTGACATGGGCACGATCAGAATTTGAGGGTTTGCTTGAGAAAACTCCGGCTGAAGTAAATGCATATTTATCTAACCCAACTGAATATACTAATGGAATGAGGAATGCTGGTGATGCTCAGGCAAGGGATAACTTGGAACGTGTACTTGAATGCTTGGACAAGGAGAAGTGTGAGACTTTGGAAGATTGTATTACTTGGGCTAGGCTTAAGTTTGAAGATTATTTTGCTAACCGAGTTAAGCAGTTAGCTTATACTTTTCCTGAAGATGCTGCAACTAGTACCGGAGCTCCTTTTTGGTCTGCACCGAAACGATTTCCTCGTCCACTGCAGTTCTCCTCCTCTGATCCAAGTCATCTCCAGTTTCTGATGGCAGCCTCTATACTACGAGCAGAAACATTTGGTATCCCTACCCCTGACTGGGTGAAAAACCCTAACAAGTTAGCTGAAGTTGTTGATAGAATGATAGTACCTGACTTTCAGCCCAAGAAGGATGCAAAAATAGTGACAGATGAGAAGGCCACCAGTCTCTCTACTGCTTCTATGGATGATGCAGTTGTTATTGATGATCTAATTGTCAAGTTAGAGAGATCCCGAGCAAATCTCCAACCAGGGTTCCGGATGAAACCAATCCAGTTTGAGAAgGATGATGATACAAACTACCATATGGACGTGATAGCTGGACTTGCCAACATGAGGGCACGGAATTATAGCATTCCTGAAGTTGACAAGCTGAAGGCGAAGTTTATTGCAGGGCGGATCATTCCAGCAATTGCAACCTCAACTGCTATGGCCACTGGTTTCGTCTGTCTGGAGTTATACAAAGCCTTGGATGGAGGGCACAAACTAGAGGACTACCGAAACACATTTGCCAACTTAGCATTGCCTCTCTTTTCCATAGCTGAGCCAGTTCCAGCAAAGGTCATCAAGCATCAAGATTTGAGTTGGACAGTCTGGGACAGATGGATTATAAAAGACAATCCTACTCTCAGGGAGCTTCTTGATTGGCTGAGGGCTAAAGGTTTGAATGCTTATAGTATTTCTTGTGGAAGTTGTCTGCTTTATAATAGCATGTTTCCTAGGCACAAAGATCGGATGGACAGAAAAGTTGTGGATTTAGCAAGGGATGTAGCCAAGATGGAAATCCCTTCATACCGTCGTCACATAGACGTTGTTGTGGCCTGTGAGGATGACGATGATAATGACATTGATATCCCTCAAGTATCCATTTATTTCCGTTGA 3294 0.4168 MLPRKRASEGEVVVEEEINNNNSNNNSSNSACSAKKVRIGCIAACSGESTVNESDLSFSSGGNNNSNSSSSGNLIAASSMAFGNSNPQEIDEDLHSRQLAVYGRETMRRLFASSVLVSGMRGLGAEIAKNLILAGVKSVTLHDEGNVELWDLSSNFVFSENDIGKNRAAASVSKLQELNNAVLVLSLTTKLTKEQLSNFQAVVFTEISLEKAVEFNDYCHSHQPPIAFIKTEVRGLFGAVFCDFGPEFTVFDVDGEEPHTGIIASVSNDNPALVSCVDDERLEFQDGDLVVFSEVHGMKELNDGKPRKIKNARAYSFTLEEDTTNYGAYEKGGIVTQVKQPKVLNFKPLREALSDPGEFLLSDFSKFDRPPLLHLAFQALDKFISEIGRFPVAGSEDDAQKFISIANDINGNLGDGRLEDVNPKLLQQFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPTEPLHPNDLKPINSRYDAQISVFGQKLQKKFEDAQVFVVGSGALGCEFLKNLALMGVSCGGQGKLTVTDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAASINPRLNIEALQNRVGPETENVFHDTFWENLSVVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPTEYTNGMRNAGDAQARDNLERVLECLDKEKCETLEDCITWARLKFEDYFANRVKQLAYTFPEDAATSTGAPFWSAPKRFPRPLQFSSSDPSHLQFLMAASILRAETFGIPTPDWVKNPNKLAEVVDRMIVPDFQPKKDAKIVTDEKATSLSTASMDDAVVIDDLIVKLERSRANLQPGFRMKPIQFEKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGFVCLELYKALDGGHKLEDYRNTFANLALPLFSIAEPVPAKVIKHQDLSWTVWDRWIIKDNPTLRELLDWLRAKGLNAYSISCGSCLLYNSMFPRHKDRMDRKVVDLARDVAKMEIPSYRRHIDVVVACEDDDDNDIDIPQVSIYFR 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02880 1097 Gene3D - 257 338 IPR042302 -
Tsu05g02880 1097 CDD Ube1_repeat1 94 479 - -
Tsu05g02880 1097 Pfam Ubiquitin-activating enzyme E1 four-helix bundle 340 410 IPR032420 -
Tsu05g02880 1097 Gene3D - 85 203 IPR042449 -
Tsu05g02880 1097 PRINTS Ubiquitin-activating enzyme E1 signature 586 611 IPR000011 GO:0008641|GO:0036211
Tsu05g02880 1097 PRINTS Ubiquitin-activating enzyme E1 signature 740 767 IPR000011 GO:0008641|GO:0036211
Tsu05g02880 1097 PRINTS Ubiquitin-activating enzyme E1 signature 231 258 IPR000011 GO:0008641|GO:0036211
Tsu05g02880 1097 PRINTS Ubiquitin-activating enzyme E1 signature 116 140 IPR000011 GO:0008641|GO:0036211
Tsu05g02880 1097 PRINTS Ubiquitin-activating enzyme E1 signature 539 562 IPR000011 GO:0008641|GO:0036211
Tsu05g02880 1097 Pfam ThiF family 492 988 IPR000594 -
Tsu05g02880 1097 Gene3D - 512 991 - -
Tsu05g02880 1097 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 487 987 IPR035985 GO:0008641
Tsu05g02880 1097 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 89 476 IPR035985 GO:0008641
Tsu05g02880 1097 Pfam Ubiquitin-activating enzyme, SCCH domain 679 932 IPR019572 -
Tsu05g02880 1097 ProSitePatterns Ubiquitin-activating enzyme signature 1. 454 462 IPR018074 -
Tsu05g02880 1097 Pfam ThiF family 95 475 IPR000594 -
Tsu05g02880 1097 Gene3D - 1005 1095 IPR038252 -
Tsu05g02880 1097 Gene3D - 664 939 IPR042063 -
Tsu05g02880 1097 TIGRFAM Ube1: ubiquitin-activating enzyme E1 89 1097 IPR018075 -
Tsu05g02880 1097 Pfam Ubiquitin fold domain 1003 1092 IPR018965 -
Tsu05g02880 1097 Gene3D - 214 502 - -
Tsu05g02880 1097 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 75 1096 - -
Tsu05g02880 1097 SMART UBA_e1_C_a_2 970 1092 IPR018965 -
Tsu05g02880 1097 ProSitePatterns Ubiquitin-activating enzyme active site. 671 679 IPR033127 -
Tsu05g02880 1097 Pfam Ubiquitin-activating enzyme E1 FCCH domain 269 339 IPR032418 -
Tsu05g02880 1097 CDD Ube1_repeat2 512 1050 - -
Tsu05g02880 1097 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 75 1096 IPR045886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02880 Tsu-Chr5 39186365 39193990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02880 80 1097 EF-hand Containing Proteins AT2G30110 83.202 0.0 1788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02880 K03178 - gmx:100811391 1913.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00850 03 7761139 7772911 Tsu05g02880 05 39186365 39193990 PCT