Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02872 ATGCTTAGTCAACCCAACTCAGTCAACTCGTCCACTAACCCATTGAGTCAACTCGTTCAGAACATGTTCTCCGacaacagcagcagcaacaacaagaTGATCATGCTAGCAGCAATCATTTCTCTGCTCCTAGTAATCCTCTTTGTCCTCCTTCTCCATATCTACGCCAAATGTTTCCTCCTAGCTCAGTCCAATTCACAGTCACCTCCTCGCCGCCGGCAAGCTCCGGTAGACATCTCCGACGTTCCAATTCCTTCCAACTTCAACCACCATTTCAACATTGAAAGATTTGAAACACAACCCAAAGGACTTGACTCAACAATAGTTTCGACAATTCCAACGTTTGTGTCGGAAGGAAAAACAGAGGAATTAGAATGTGTGATTTGTTTGAGTTATATTGAAAAAGGTGAGATTGGAAAAAAGTTACCAAAATGTGGACATGTTTTTCATGTGGAATGCATTGATATGTGGTTGAATTCACATTGCAATTGTCCAATTTGTAGAAGTTTGATTGTTGAGAATGATTCTCATGGTGGTGGTGTTGTTGAGATTGTAATTGAAAGTTCAAGTGGTTCTGTTTCTGTATCAGAAAGTTCTTCTCTGTCTTTGTTTGGTTTCTCTTTGAAGAGAATTCTTAGCaaagtttttctttcttctcatgTAAATGAATTAGATGATGATTAA 684 0.367 MLSQPNSVNSSTNPLSQLVQNMFSDNSSSNNKMIMLAAIISLLLVILFVLLLHIYAKCFLLAQSNSQSPPRRRQAPVDISDVPIPSNFNHHFNIERFETQPKGLDSTIVSTIPTFVSEGKTEELECVICLSYIEKGEIGKKLPKCGHVFHVECIDMWLNSHCNCPICRSLIVENDSHGGGVVEIVIESSSGSVSVSESSSLSLFGFSLKRILSKVFLSSHVNELDDD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02872 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 172 IPR013083 -
Tsu05g02872 227 CDD RING-H2_EL5_like 125 168 - -
Tsu05g02872 227 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Tsu05g02872 227 SMART ring_2 126 167 IPR001841 -
Tsu05g02872 227 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 6 192 - -
Tsu05g02872 227 Pfam Ring finger domain 125 168 IPR001841 -
Tsu05g02872 227 PANTHER RING FINGER DOMAIN-CONTAINING 6 192 - -
Tsu05g02872 227 SUPERFAMILY RING/U-box 118 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02872 Tsu-Chr5 39017740 39018423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02872 31 222 C3H Transcription Factor Family AT2G42360 32.110 1.38e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02872 - - cam:101493591 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02872 05 39017740 39018423 Tsu05g02872 05 39017740 39018423 ECH
Tsu03g00871 03 7974731 7975429 Tsu05g02872 05 39017740 39018423 PCT