Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02862 ATGTctacttcatcttcatcattcaaTTTGAACCATCCTCAATGGATGTACGACGTGTTCATCAGTTTCAGAGGCGAAGACAGTCGTAAAACTTTAGTTTCTCATCTATACGCCGCCCTCTCAAACGTAGGAATCAACACTTTTCTCGACGACGAAAAGCTTCAAAAAGGATCGGAGCTGAGCCCACAACTATTACGAGCAATACAAGGGTCTCAAATATCTTTAGTTGTTTTCTCAGAGAATTACAGTAGATCTAGTTGGTGTCTTATTGAACTGGAAAAAATCATGGAATACCGCGGAACTGATGGTCAAATGGTTATTCCAATATTTTACCATATTGACCCATCCATTGTCCGTCGTCAGGTAGGTGATTTTGGAAATGCTCTAGAAATTACTGCCAGAAGAACACACACAGATAGAGATAAGCAAGAACTGCTGCGGGCGTGGAAATCTGTTCTTACCCAAGCTGCAAATTTATCTGGCTGGGATGACAGCTCTTTCAGgAGCGAAAATGAACTGgtgaaaaaaattgttgaggatATTTTGGCAAAGCTAGACAACACATTCATGTCTCTTCCTGAGTACCCAGTTGGACTAGAGTCCCGTGTGAACAAAATGATTCCAATGATCGAAAAACAATCAAGCAATGTTTTTATGGTAGGCATCTGGGGAATGGGAGGATTGGGTAAAACTACCACAGCCAAAGCCATCTACAATCAAATTCATCGCAAATTTGTTTATAGAAGTTTCATTGAAAATATTAGAGAAACTTATGAGATGGATAATAGAGGCCGATGGTATATTCATTTACAAGAACAACTTCTTTCAGATCTCCTCAAAACAAAGGAGAAGATACACAACATTGCCTCTGGAACAACTGCAATCAAGAAAATGCTCTCAGCAAAAAAGGTACTCATTGTACTTGATGATGTGACCAAAGAAGAACAAGTTAAAGCCCTATATAGAAGTCGTAAGTGGTTTGGATCAGGAAGTGTAATAATTGTTACAAGCAGGGATAAACACATACTTAAGTCACTTCAAGTTGACCATGTCTATACAGTTACCGAAATGGACCAAAAGGAGTCCCTTGAGCTTTTCTGTTGGCATGCTTTTAGAAAGGCAAGTCCAAGAGCAGACTTCAGTGAGCTCTCAAGAAATGTAACTACTTACTGTGGAGGATTACCCTTAGCTGTTGAAGTCATTGGATCTTACTTATATGACAGGACAAGAGAAGAATGGACAAGTGTGTTATCAAAACTAAAGGTAATTCCCGACCAACAAGTGCACGAGAAACTAAGAATAAGCTATGATGGTCTAAGGGATGGCAAGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATCGGCAAGGACAAAACCTATGTTACTGAGATACTAAATGGCTGTGGACTTTTTGCTGGTATCGGAATACCTGTCCTCATAGAGCGGAGTCTCCTAAAAGTTGACAAGAATAACAAGCTCGGAATGCATGATCTAATAAGAAACATGGGAAGAGAAATTGTCCGCCAAAATTCAGAAAAAGATGCTCGCCAAATTTCAGAAAAAGATCCAGGGGAGCGTAGTCGGTTGTGGCTTCAGGAAGATGTACATGGTGTTTTGACAAATAATACTGGAACACAAACTGTTGAGGGCTTGATTTTAAACTCAGAAAGAACAAGCAGAGTTAGCTTCAATACTAGTGCTTTCCAGGAGATGAAGAAACTGAGACTTTTACATCTTGATTGTGTTGACCTCACCGGAGATTTTGGGTTTCTTTCCAAACAACTGAGATGGTTCAATTGGCAACAGTCTACCTTCAACTGTATACCCAATAACTTTTATCAAGGAAATCTAGTtgtttttgaattaaaatatagCATGGTTAAACAAGTTTGGAAGGAGACCCAGTTTTTGGACAAGCTAAAAATTCTCAACCTCAGTCATTCCAAGTTCTTGAATACCACCCCTAACTTTTCATTATTACCTAGTCTAGAAAAGCTCATTATGAAGGATTGTCCAATTTTGTCCAAGGTACACCCGTCCATTGGAGATCTCAAGAATCTTCTTCTAATAAATTTTAAGGATTGTACAAGTCTTGACAATCTCCCAAGAGAGATCTATCAGTTGACGTCTGTTACAACTCTCATCCTTTCTGGTTGTTCAAACATTAATAAATTTGAAGAAGATATAGTGCAAATGAAATCCTTGACAACTCTAATCGCAGCAAAAACTGGTGTCAAACAAGCACCCTTTTCCATAGTTAGATTAAAAAGCATCATGTATATATCCCTGTGTGGGTATGAAGGATTTTCATGCGATGTTTTTCCTTCTCTCATATGGTCTTGGATGTCACCAACAATAAATCACTTACCACATAGCCCCCACATTTCCTTGGATGTAGAAAGTAATAATTTGGGTTTGGGCTATCAATTGCCAATGGGCAGAAGTTGTTCAACACTTAGAGGTGTTTGGGTACAATGCTGCTCAGAGATTCAACTGAATGAAGAATTAAAAAGATTGCTTAATGATCTAAACAGTGTGGATTTTACTGAATCGGAAACTTCATATGCATCACAAATCCTAGATCTGTCATTGAAATCTCTTTTGATTACTCTTGGCAAGAGCTTATCACAGGGATTAACAACCAGTGGTTCTGGTGATTGTTTCCTTCCAGTTGATAATTATCATTCTAGGTCATCATCTTATACATCTTATACATGTATAGGACCTTTAGTACGTTTTCGAGTGCCTGAGGATAGTGATTGTTGCATGAAGGGAATAACTTTATGTGTTGTTTATTCATCAACATCTGAAAACATGTCAAGTGAATGTCTCATCGgcgtttttattattaattatacaaAACTCACCATGGATATATATAAGCAAGACACAGTAATGTCATTTAATGATGAAGATTGGCAGGATGTAAAATCAAATTTAGGACCTGGCGACAATGTGgggatttttgttgttttagggAATGGTTTCACTGTTAAGGAGACAGCTGTCTATCTAATACAAGGCCAATCAAGTACTATGGAAATTGAATCATCAATTACCAGGGAAGTTGAGCAATCTATTATGGTAAAAATGGAGCCATTGCCCGAAGTGGAAGTGCAAACACCACCTAATGTGAAAACAGAACCATCACCTGAAGAGGAATTACAACCATCACTTATTGTCCAGAATGAGCCATCATCGGCGCCAGCACGTATTGTCCAGAATGAGCCATTACCACAGCCAAATAAAAGTATCTTTGTAAAATTTGCAAAGAGAGTTGGTAAATGTGTATGCTTGAAACCAGAATAG 3315 0.3729 MSTSSSSFNLNHPQWMYDVFISFRGEDSRKTLVSHLYAALSNVGINTFLDDEKLQKGSELSPQLLRAIQGSQISLVVFSENYSRSSWCLIELEKIMEYRGTDGQMVIPIFYHIDPSIVRRQVGDFGNALEITARRTHTDRDKQELLRAWKSVLTQAANLSGWDDSSFRSENELVKKIVEDILAKLDNTFMSLPEYPVGLESRVNKMIPMIEKQSSNVFMVGIWGMGGLGKTTTAKAIYNQIHRKFVYRSFIENIRETYEMDNRGRWYIHLQEQLLSDLLKTKEKIHNIASGTTAIKKMLSAKKVLIVLDDVTKEEQVKALYRSRKWFGSGSVIIVTSRDKHILKSLQVDHVYTVTEMDQKESLELFCWHAFRKASPRADFSELSRNVTTYCGGLPLAVEVIGSYLYDRTREEWTSVLSKLKVIPDQQVHEKLRISYDGLRDGKEKDIFLDICCFFIGKDKTYVTEILNGCGLFAGIGIPVLIERSLLKVDKNNKLGMHDLIRNMGREIVRQNSEKDARQISEKDPGERSRLWLQEDVHGVLTNNTGTQTVEGLILNSERTSRVSFNTSAFQEMKKLRLLHLDCVDLTGDFGFLSKQLRWFNWQQSTFNCIPNNFYQGNLVVFELKYSMVKQVWKETQFLDKLKILNLSHSKFLNTTPNFSLLPSLEKLIMKDCPILSKVHPSIGDLKNLLLINFKDCTSLDNLPREIYQLTSVTTLILSGCSNINKFEEDIVQMKSLTTLIAAKTGVKQAPFSIVRLKSIMYISLCGYEGFSCDVFPSLIWSWMSPTINHLPHSPHISLDVESNNLGLGYQLPMGRSCSTLRGVWVQCCSEIQLNEELKRLLNDLNSVDFTESETSYASQILDLSLKSLLITLGKSLSQGLTTSGSGDCFLPVDNYHSRSSSYTSYTCIGPLVRFRVPEDSDCCMKGITLCVVYSSTSENMSSECLIGVFIINYTKLTMDIYKQDTVMSFNDEDWQDVKSNLGPGDNVGIFVVLGNGFTVKETAVYLIQGQSSTMEIESSITREVEQSIMVKMEPLPEVEVQTPPNVKTEPSPEEELQPSLIVQNEPSSAPARIVQNEPLPQPNKSIFVKFAKRVGKCVCLKPE 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02862 1104 Pfam TIR domain 17 191 IPR000157 GO:0007165
Tsu05g02862 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 451 IPR027417 -
Tsu05g02862 1104 Gene3D - 356 440 IPR042197 -
Tsu05g02862 1104 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 1010 IPR044974 GO:0006952
Tsu05g02862 1104 PRINTS Disease resistance protein signature 637 653 - -
Tsu05g02862 1104 PRINTS Disease resistance protein signature 298 312 - -
Tsu05g02862 1104 PRINTS Disease resistance protein signature 391 405 - -
Tsu05g02862 1104 PRINTS Disease resistance protein signature 219 234 - -
Tsu05g02862 1104 SMART till_3 16 159 IPR000157 GO:0007165
Tsu05g02862 1104 ProSiteProfiles TIR domain profile. 15 185 IPR000157 GO:0007165
Tsu05g02862 1104 Pfam NB-ARC domain 202 422 IPR002182 GO:0043531
Tsu05g02862 1104 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Tsu05g02862 1104 Gene3D - 14 186 IPR035897 -
Tsu05g02862 1104 Gene3D - 187 352 IPR027417 -
Tsu05g02862 1104 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 1010 - -
Tsu05g02862 1104 SUPERFAMILY L domain-like 497 842 - -
Tsu05g02862 1104 Gene3D Ribonuclease Inhibitor 541 883 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02862 Tsu-Chr5 38881164 38891518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02862 17 757 WRKY Transcription Factor Family AT4G12020 29.265 5.84e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02862 - - mtr:MTR_8g011710 1182.16