Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02860 ATGGCTGAAGCTTTACTTGGAATTGCGTTTGAGAATTTGAATTCTCTGCTTCAAAATGAATTGTCCACGCTGTTTGGAATCAGGTCAAAGGCTGACAAGCTATCAACCACCTTGGATCTGATCAAGGCTGTTCTTGAAGATGCTGAGAAGAGACAATTCACTGACCGTGCTATTAAGGTATGGCTACAACAACTCAAAGATGCTGTATATGTGCTCGATGATATTCTTGATGAGTGTTCCATTAAATCCAATCGACTTAAGGGCTCATCCTGTTTCCAACCAATGAACATCATGTTTCGCCGTGACATTGGTAAGAGATTGAAAGAAATTACAAGCACATTCGATGAAATTGCTGACAGGAAGAACAAGTTTCTTCTACAAGAGGGTGTCACTGCTAAGGAAATGACAATTGAAGTGGCAGAATGGCGTCAAACCAGCTCGATTATTGCTGAACCCGAAGTGTATGGACGAGAAGATGATAAAGAGAAGATTGTCCAGTTTCTTCTCAACCAAGCGAGGGACTCTAACTCCCTTTCCGTCTATCCCATTGTTGGCTTAGGTGGTGTTGGAAAAACAACGCTCACTCAATTGGTCTACAATGATCAAAGGGTGAGCAGTACCACCGATTTTGATACAAAGATATGGGTTTGTGTTTCTGAATCTTTCTCGGTCAAGAGGATTCTATGTTCCATTATAGAATCTATCAAAAGTGAGAAGTGTGATGCCTTGGATTTGGATGTAATACAAAAAAAAGTGCAAACACTATTGCAAGGTAAAAGATTTTTGCTAGTTTTAGATGACGTTTGGCACAAAAATGAAGAACTTAAATTCGGATTGAGTCAAGAGAAATGGAATCAGTTGAAATCAGTGTTGTCCAGTGGATCCAAAGGTAGTTCTTGTTTAGTTTCCACTCGCGATGAGGTTGTCGCATCAATCATGGGAACATGTCAAGCTCATCATTTGTCTGGTCTCTCTGAAAATGAATGTTGGTTGTTATTCAAACAATATGCATTTGGAATTGACAGAGAAGAACAAGTAGAGCTTGTGGAAATAGGCAAGGAGATAGCAAAAAGGTGCAAGGGATTGCCTCTTGCTGCACAAGCATTGGGAGGTTTAATGCGCTCTAGGAGTACAGAAAAAGAATGGCTTGAAATTAAAGAAAGCAGACTTTGGGATTCACCGAGTGACAATTATATTTTGCCAGCGTTGACATTGAGTTATTCTTATTTAACGCCGACCTTAAAGCAATGCTTCACCTTTTGTGCTATATTTCCCAAAGATAGAATAATGTTGAAGGAAGAATTGATTCATCTTTGGATGGCTCATGGATTTATTTCATCTAGGAATAATTTGGAGGTTGAAGATGTTGGCAGCATGATTTGGAATGAACTGTGTCAAAAATCATTATTTCAAGACATTAAGACCAATGAATATTCTGGTGCAACTTCTTTCAAGATGCATGATCTTGTCCATGATCTTGCTCAGTCAATAATGGGGCAAGAATGTTTGTATTTGGAGGATGCAAACATGACAAGTTTATCAAAAAGCACACACCACATAAGTGTTCACTCGAAAAACTTGCTATCAATCAATGAGGGTGCCTTCAAAAAAGTTGAATCCTTGCGAACATTTTTTCAACTGGACCAATATAGAAAAAACCTTCATTACTGCCCAAGAAATCGTTTTCTTCGGGTTTTACGCACATCTTTTATCCACATACCATCACTAGGGAGTTTAATTCATTTAAGGTATTTGGAACTTTGTTACCTTGACATAAAAACACTGCCCGACTCAATTtacaacttaaaaaaattggaaatattGAAACTCAAACATTGTGATAGACTGAGTTGTCTTCCAAAACGCTTGGCTTGCTTACAAAATCTTAGACATCTAGTCATTTATTATTGGCCTTCTCTGTCTCGCTTGTTTCCAAACATTGGAAAATTATCTTTCCTAAGAACATTACGTTTATACATTGTTAGTTTAGAGAAAGGTCATAGCTTGGCAGAATTACGTGATCTAAACCTTGGCGGAGAACTGAGTATCAAAGGGTTAAATAATGTTGGCAGTTTATCTGAAGCTCAAGAGACCAATTTGATGTGTAAAAAAGACCTTCAACAATTATGGTTGTCATGGGAAATAATAAGTCATGAATTTACAAACACCCCTGCTGTTAGTGCTGAACAACTACTTGAAGTGCTTCAACCTCACTCAAATCTCAAGAGTTTGGGAATATTTTACTATGAAGGATTATTGTTACCAAGTTGGATAAGTATTCTTAGTAATTTAGTTTATCTTTTGCTTAAAGATTGTATCAATTGTGTGCGGCTACCTTCAATTGGTAAACTGCAATCTCTAAAAACATTGATCTTAGACAATATGGATAATATAAAATACTTGGATGAAGGATCTCACGATGGTATGGAGGTGATGGTTTTCCCATCTCTGGAGGTACTCATATTATATGAGTTACGAAACATAGAGGGGTTATTGAAAGTGGAAAGAGGGGACATATTTCCTTGTCTTTCTCGTTTGGATATCGTCTCTTGCCCTAAACTTGGACTACTACCATGTCTTCCATCTCTTAAACAGCTCGATGTCAGTGGATGTAACAATGAGTTACTGAGGTCAATCTCTACCTTCTGCAGTCTTACCAGTCTTTTCCTTGGTAGAGGTGATGAAGGAATAACATCCTTCCCAGAGGGGATGTTCACAAACCTTACTTTTCTTCAAACTCTCAGAATATTTGATTTCCCAAAATTGAAGGAGTTACCAAATCAACCCTTTAACCTAGCTTCTTTGGAGCGTCTGACCATCTCTGGATGCCATGAGCTTGAGTCATTACCAGAGCAAATTTGGGAAAGTCTACAATCCCTTCGAATTCTAAAGATTTGTAATTGTGAAGGATTGCGATGGTTGCCGGAGGGTATTCGACACCTCACTTCTCTTGAGATTGTCGCATTTCCACCTAAACTGAGCATGTCAAAGAATTGTATGATGAAGGCCAGGTTTCCAGATACACAGCCATTAAAAGGTCGATCGAACCAATTCTGCTCAAGTTGTTGGGAAGTCTCTAGATGTAAATACTTTGAGTTCACTGTCATATTCCAATATGTGGAATGCTCTAGTTGTTGGGAAGCCAAGATATAA 3153 0.3812 MAEALLGIAFENLNSLLQNELSTLFGIRSKADKLSTTLDLIKAVLEDAEKRQFTDRAIKVWLQQLKDAVYVLDDILDECSIKSNRLKGSSCFQPMNIMFRRDIGKRLKEITSTFDEIADRKNKFLLQEGVTAKEMTIEVAEWRQTSSIIAEPEVYGREDDKEKIVQFLLNQARDSNSLSVYPIVGLGGVGKTTLTQLVYNDQRVSSTTDFDTKIWVCVSESFSVKRILCSIIESIKSEKCDALDLDVIQKKVQTLLQGKRFLLVLDDVWHKNEELKFGLSQEKWNQLKSVLSSGSKGSSCLVSTRDEVVASIMGTCQAHHLSGLSENECWLLFKQYAFGIDREEQVELVEIGKEIAKRCKGLPLAAQALGGLMRSRSTEKEWLEIKESRLWDSPSDNYILPALTLSYSYLTPTLKQCFTFCAIFPKDRIMLKEELIHLWMAHGFISSRNNLEVEDVGSMIWNELCQKSLFQDIKTNEYSGATSFKMHDLVHDLAQSIMGQECLYLEDANMTSLSKSTHHISVHSKNLLSINEGAFKKVESLRTFFQLDQYRKNLHYCPRNRFLRVLRTSFIHIPSLGSLIHLRYLELCYLDIKTLPDSIYNLKKLEILKLKHCDRLSCLPKRLACLQNLRHLVIYYWPSLSRLFPNIGKLSFLRTLRLYIVSLEKGHSLAELRDLNLGGELSIKGLNNVGSLSEAQETNLMCKKDLQQLWLSWEIISHEFTNTPAVSAEQLLEVLQPHSNLKSLGIFYYEGLLLPSWISILSNLVYLLLKDCINCVRLPSIGKLQSLKTLILDNMDNIKYLDEGSHDGMEVMVFPSLEVLILYELRNIEGLLKVERGDIFPCLSRLDIVSCPKLGLLPCLPSLKQLDVSGCNNELLRSISTFCSLTSLFLGRGDEGITSFPEGMFTNLTFLQTLRIFDFPKLKELPNQPFNLASLERLTISGCHELESLPEQIWESLQSLRILKICNCEGLRWLPEGIRHLTSLEIVAFPPKLSMSKNCMMKARFPDTQPLKGRSNQFCSSCWEVSRCKYFEFTVIFQYVECSSCWEAKI 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02860 1050 Gene3D - 6 122 - -
Tsu05g02860 1050 SUPERFAMILY RNI-like 813 987 - -
Tsu05g02860 1050 CDD RX-CC_like 2 119 IPR038005 -
Tsu05g02860 1050 Gene3D Ribonuclease Inhibitor 501 854 IPR032675 -
Tsu05g02860 1050 SUPERFAMILY L domain-like 485 858 - -
Tsu05g02860 1050 Gene3D - 413 496 IPR036388 -
Tsu05g02860 1050 Gene3D - 137 318 IPR027417 -
Tsu05g02860 1050 PANTHER DISEASE RESISTANCE PROTEIN RP 30 951 IPR044974 GO:0006952
Tsu05g02860 1050 Coils Coil 31 51 - -
Tsu05g02860 1050 PANTHER OS05G0414200 PROTEIN 30 951 - -
Tsu05g02860 1050 Gene3D - 323 411 IPR042197 -
Tsu05g02860 1050 Pfam Rx N-terminal domain 6 89 IPR041118 -
Tsu05g02860 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 421 IPR027417 -
Tsu05g02860 1050 Gene3D Ribonuclease Inhibitor 856 1008 IPR032675 -
Tsu05g02860 1050 Pfam NB-ARC domain 157 407 IPR002182 GO:0043531
Tsu05g02860 1050 PRINTS Disease resistance protein signature 255 269 - -
Tsu05g02860 1050 PRINTS Disease resistance protein signature 359 373 - -
Tsu05g02860 1050 PRINTS Disease resistance protein signature 600 616 - -
Tsu05g02860 1050 PRINTS Disease resistance protein signature 180 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02860 Tsu-Chr5 38820136 38823627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02860 846 989 WRKY Transcription Factor Family AT4G12020 30.612 4.98e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02860 - - mtr:MTR_5g071220 1344.33