Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02859 ATGGCACCGAAAGCAAAAACCGCTAGAGTAAGCCGTAACCCTGAATTGATCAGGGGTATCGGAAAATACTCTAGGTCTACCATGTACCACAAGAGAGGTCTTTGGGCTATCAAGGCCAAACACGGCGGCGCTTTCCCTCGTCATGATCCCGTCGCTAAACCTGAAACTCCCGCTGAGAAGCCTCCCAAATTTTACCCCGCCGATGATGTTAAGAAGCCTCTCCGTAACAAGCACAAACCAAAACCTACTAAGCTTAGGGCTAGCATTACTCCCGGCACAGTGTTGATTATTCTTGCCGGAAGATTTAAGGGGAAGAGAGTTGTGTTTCTTAAGCAGCTTCCTTCTGGACTTCTTCTAGTGactggtaattattatttttcaggAATGAACATTGTTTGGATTACTTCATTTTTTAATGTTGATAAGTTTGATGACAAGTACTTCTCAAAGGAGTCCGCAAAAAAGACAAAGAAGGGAGAGGGAGAGTTCTTTGAGGCAGATAAGGAGGATAAAAAAGTCCTCCCCCAGGAAAAGAAGGACGATCAGAAGACTGTCGATGCTGGTTTGTTAAAAGCCATTGAGAGTGTTCCGGACTTGAAGACTTACCTAGGTGCCAGGTTTTCCTTGAAAGCTGGTGTGAAGCCTCATGAGTTACTCTTCTAG 663 0.4374 MAPKAKTARVSRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGAFPRHDPVAKPETPAEKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGNYYFSGMNIVWITSFFNVDKFDDKYFSKESAKKTKKGEGEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIESVPDLKTYLGARFSLKAGVKPHELLF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02859 220 SUPERFAMILY Translation proteins SH3-like domain 87 163 IPR008991 -
Tsu05g02859 220 PANTHER 60S RIBOSOMAL PROTEIN L6 1 220 - -
Tsu05g02859 220 MobiDBLite consensus disorder prediction 46 75 - -
Tsu05g02859 220 Pfam Ribosomal protein L6, N-terminal domain 3 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Tsu05g02859 220 Pfam Ribosomal protein L6e 139 220 IPR000915 GO:0003735|GO:0005840|GO:0006412
Tsu05g02859 220 Gene3D - 87 135 IPR014722 -
Tsu05g02859 220 PANTHER 60S RIBOSOMAL PROTEIN L6 1 220 IPR000915 GO:0003735|GO:0005840|GO:0006412
Tsu05g02859 220 MobiDBLite consensus disorder prediction 46 85 - -
Tsu05g02859 220 CDD KOW_RPL6 81 220 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02859 Tsu-Chr5 38811358 38813081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02859 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 68.670 6.66e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02859 K02934 - gmx:100785356 340.887