Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02858 ATGACTAAGATTCATTCTAATTCATGGGTGAGAGGTAAGTGTATTGGTAAAGGAGCGTTTGGCGTTGTGAATTTAGCTTATTCAAAAAGCGATTCTAGTGTTTTCGCGGTGAAATCTGTTGATTTAAAAACATGTCATCCAAATCAGTTACAAGCGTTGGAGAATGAAATTCGAATATTGAAACggttatcttcttcttctttttcttcttcttcttgttcttcttcgcACGTGGTAGGTTTTTACGGAGAAGATGTCACGTGTGAAGGAGAAGGAACTACGACGTCGTTTAAGAATCTACACTTGGAGTATATGCCAGGTGGCACCGTTGCTGACATGGATCGTGCTGACGTGGATGAACGGTTTGTTAGAAGCTTCGCGTGGTGTCTTGTTAACGCGCTCAGTGAAATTCACGCGCGTGGTGTTGTTCACTGTGATGTCAAAGGGAAGAATGTTCTCGTCGCCGGTGATGGTTCCGTTGTTAAGCTCGCTGATTTTGGTTCGGCGGTGGAATTTGAATTCACCGGTGGAGAGTGTGAAGTTCCGCGTGGAAGTCCGATGTGGATGGCGCCGGAGGTAATTCGCCGGGAGTATCAAGGACCGGAGTCCGATGTATGGTCACTTGGATGTACTTTGATTGAAATTCTCACCGGAAATTCGCCGTGGGAGGATCGCGGTATCGATACGTTGAGTCGAATTGGTTTTTCCGATGAGTTACCGGAGTTTCCGAGTGGTTTATCAGAGCTTGGAAGAGATTTTCTCGAGAAGTGTCTCCAAAGAGATCGGAGCCGGAGATGGAGATGTGATCAGCTACTTCAGCATCCATTTTTGTTACCGTGTGATCACGTTGTGGAATCGTCACCTCGTTGCGTTTTGGATTGGCTTGACTCGCAATTCAGTGAGTCAGAAAACGAGTTCGAATTAGAATTCGAAGGAAATGAAGTGAAGTTGAATAATAGTGAtgaaaatatagttaaaaatagAATTAGTAAATTAGCGACGGAGTTAAGTGTAAATTGGGAAAGTGATGATTGGGTTTTGGTGAGGGCAATTTCGTCAGAAGAAAAAGCTCAAAATTATGAAGGTGAAGAAGTAGGGGTAACATGGGAATTTGAGAATGTTGTAGAAAAGGAAATGGAGGTAGGGGCTAGTTTGGTAAATTTGGATTGTGATGAAAGGGTAAAACTGGAAATGTGGAAGTTTGGTAAGAAGAAGAGGTTGTTGTGGCGGTGTGAGTGGAAGTACAACCGTAACCGCAGGAACAGCATTATAGGTGGAAGTGGAAGTTGGCGTAGGAGACTGGCGCCTAGACACTCAGAGCTAGACTCAGTTAAGTCAATTTACGCCCGAGCATAG 1356 0.4248 MTKIHSNSWVRGKCIGKGAFGVVNLAYSKSDSSVFAVKSVDLKTCHPNQLQALENEIRILKRLSSSSFSSSSCSSSHVVGFYGEDVTCEGEGTTTSFKNLHLEYMPGGTVADMDRADVDERFVRSFAWCLVNALSEIHARGVVHCDVKGKNVLVAGDGSVVKLADFGSAVEFEFTGGECEVPRGSPMWMAPEVIRREYQGPESDVWSLGCTLIEILTGNSPWEDRGIDTLSRIGFSDELPEFPSGLSELGRDFLEKCLQRDRSRRWRCDQLLQHPFLLPCDHVVESSPRCVLDWLDSQFSESENEFELEFEGNEVKLNNSDENIVKNRISKLATELSVNWESDDWVLVRAISSEEKAQNYEGEEVGVTWEFENVVEKEMEVGASLVNLDCDERVKLEMWKFGKKKRLLWRCEWKYNRNRRNSIIGGSGSWRRRLAPRHSELDSVKSIYARA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02858 451 CDD STKc_MAPKKK 8 277 - -
Tsu05g02858 451 Pfam Protein kinase domain 11 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02858 451 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 376 - -
Tsu05g02858 451 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02858 451 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tsu05g02858 451 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 5 376 - -
Tsu05g02858 451 SUPERFAMILY Protein kinase-like (PK-like) 7 295 IPR011009 -
Tsu05g02858 451 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02858 451 Gene3D Transferase(Phosphotransferase) domain 1 3 346 - -
Tsu05g02858 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02858 Tsu-Chr5 38796279 38799507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02858 9 358 MAP Kinase Kinase Kinase AT2G30040 56.941 4.86e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu05g02858 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02858 - - mtr:MTR_5g071560 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02858 05 38796279 38799507 Tsu05g02858 05 38796279 38799507 ECH