Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02857 atgacttGTTCCGTCGCAGTTTCGAATTCACCGGTGTTTTCACCATCTTCATCTCTTTTCTGCAacaaatcttcaatcaaatcttcttcttcttctgaaaCTTTAACGTTATCTCTTTCTCATCTTAAACCTATTAACTCttcttcaacttcttcttcttgttcttctccTTCTCCTTGTTCTTCACCTTCTTCACCTTTTTGTCTTCGATTACCGAAACTACCCTCGGTTTTTTCATccaataataacaacaacaactctGTGTCTTCAAACGATGCTGTTTTGAAGAGAAAACGACCGACAAGGCTTGATATACCTGTTTGTTCTTCTCTTGCTTTTGGTGTTCCGGCGGCTACTCCGTCTGCGGTGGCGCGTGATGTTGTTGAAGCTGAAGGAGATGGGTATTCTGTTTATTGTAAGAGAGGGAGGAGAGAGTATATGGAAGATCGTTTTACTGCTGGAGATAATCTTCGTGGTCAACGCAATTTGGCTTTTTTTGGCGTATTTGATGGCCATGGAGGTGCCAAAGCTGCTGAATTTGCGGCAAATAACTTAGAAAAGAACATCTTGGATGAGGTGATCATGAGTGATGAAGAAGATGTTGAGGAGGCTGTGAAGCGCGGTTACCTCAATACCGATTCTGAGTTCATGAAAAAAGAACTCCATGGTGGATCTTGTTGTGTAACAGCATTGATTAGGAATGGTAACTTAATTGTATCTAACGCCGGTGATTGCCGTGCTGTCATTAGTAAAGGAGGGGTTGCAGAGGCTGTAACATCTGATCACCGACCTTCGAGGGAAGACGAAAGGAACAGAATTGAAACCCTGGTAATTTCTTTGACCATTGTAGTGGTTTATCTTTTTATATGCGGTTTATCGAAACCAATGTTTGAGTTTGGTTTTGTTGGTTCTTATTCTTATGTATCGAAATTGGTTTTGCAGGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGAGGATTCAAGGATCTCTGGCTGTATCTAGAAGTATCGGAGATCGACACCTTAAACAATGGGTCACAGCTGAGCCCGAGACTAAAGTTATCAAAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTAAAATTCATTACAATGTTCTTGTTTATGTCAGCGTTTGTCAAATCCGATTCtaaatga 1182 0.3773 MTCSVAVSNSPVFSPSSSLFCNKSSIKSSSSSETLTLSLSHLKPINSSSTSSSCSSPSPCSSPSSPFCLRLPKLPSVFSSNNNNNNSVSSNDAVLKRKRPTRLDIPVCSSLAFGVPAATPSAVARDVVEAEGDGYSVYCKRGRREYMEDRFTAGDNLRGQRNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVIMSDEEDVEEAVKRGYLNTDSEFMKKELHGGSCCVTALIRNGNLIVSNAGDCRAVISKGGVAEAVTSDHRPSREDERNRIETLVISLTIVVVYLFICGLSKPMFEFGFVGSYSYVSKLVLQGGYVDLCRGVWRIQGSLAVSRSIGDRHLKQWVTAEPETKVIKIEPEHDLLILASDGLWDKVKFITMFLFMSAFVKSDSK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02857 393 Gene3D - 126 393 IPR036457 -
Tsu05g02857 393 ProSiteProfiles PPM-type phosphatase domain profile. 134 393 IPR001932 -
Tsu05g02857 393 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169
Tsu05g02857 393 SMART PP2C_4 124 389 IPR001932 -
Tsu05g02857 393 PANTHER PROTEIN PHOSPHATASE 2C 3 276 IPR015655 GO:0004722|GO:0006470
Tsu05g02857 393 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 276 - -
Tsu05g02857 393 Pfam Protein phosphatase 2C 315 376 IPR001932 -
Tsu05g02857 393 Pfam Protein phosphatase 2C 135 276 IPR001932 -
Tsu05g02857 393 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 314 376 - -
Tsu05g02857 393 SUPERFAMILY PP2C-like 135 376 IPR036457 -
Tsu05g02857 393 PANTHER PROTEIN PHOSPHATASE 2C 314 376 IPR015655 GO:0004722|GO:0006470
Tsu05g02857 393 CDD PP2Cc 134 375 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02857 Tsu-Chr5 38779256 38782445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02857 1 375 PP2C-type Phosphatase Gene Family AT2G30020 57.474 1.53e-129 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02857 K17506 - gmx:100797934 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02857 05 38779256 38782445 Tsu05g02857 05 38779256 38782445 ECH
Tsu03g00875 03 8031053 8032436 Tsu05g02857 05 38779256 38782445 PCT