Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02852 ATGGATATACATTGCATCTTGAGGAGTTTGGAAGATGGTTTTCTGGGATCATGGCATCCGGGGAAAATTGTCCGCTGTGGAAGGAAGAAGCGATATGTCAAATATGACAATATTCTCAATGATGATGAATCAGATTACCTTGTTGAAGTGGTGGATGTTTCTAGTGTTTTTGATGGTGTTAATCCTTCATTTGGTTCAGATTATGTCTATGAACGCGGCCTAATTAGACCATTGCCTCCTCCCATTGATTTACGGATAAAGGATCTTCCATTTGGACTCTGTGTTGATGTGAATTATCAAGATGCTTGGTGGGAAGGTGTGATATTCGATCACTATGATGGAACGAAGGAGAGGAGCATATTCTTCCCTGATTTGGGTGATGAAATGAAGGTTGGAGTTAAACAATTGAGAATCACTCAGGATTGGGATGAATCAACTGATAATTGGTTACCGAGAGGGAAATGGGCTTTTCTTGAGTTGTTTGAGGAGTGTGAGAGGGTATCCTATGTTGCAGTCTCGGTGAAACAGATTTGGTATGATGTTAGGATGAGAAAGGATTTTGCTGAAACCATTAGAGAATGGACTTGTAACGTGAAGGAGTTCTGGAGAGAGATGGTTGTCGAGGTGATTGGTGATTACTATACCCTCACTCTAAATGAAGTTCGCCTCGCATTAAACCTTCCGAAGAATTTACTCGAAGGGGGGTCATCTGaaccatctgataatgttcattGTGATGTTGCTAGTCATGGTAATGCAATTGGTTCTGACATTGGAATAGCTAATAGACCCAAGGAAAATGGTGACTTCTCGAACATGTTGGATGATGATCAAAACTGTGGTAGCACTAGCCTCGTTCCTTTGGTGGATGAGGAAGTTGAGAAGGATAGTCTTTTACAAGAAGAGCCTGGATCACAAAATGAAATTTCCTGCTATGGTGTTGATGTATTAGATTCAGATAAAAACCGAAGACGCCGACGCTCTACGTCAATAATTTGGAAACCTTTGGTGTTGTCTGAAGTTGAATTCTGTCCTGGAGTTATTAATGAGTATGCAGTTGGATGTAGGAGCAAGACGGTTCGAGAACTTTTGAAGACGAAAGTTAGAAAACATCTTGCTTATCTTGGATGGACAATTGAATGGACTGAAAACAATTGTCCTCAAAATAGACGGTACCGGTACAAGTCACCGGATATACGTGACCATAAGTTTTACACTTCAATTTTTCAGGTTACTAAAGTTTTGCAAGAGGATTCCAACATGAACTCTGTGCGACCCCAAATTGACAGAAATCTTTCACATTTACTCTGTGATCCACCACAAATAAACCGAGGTTTGGATGTTTGTCCTCAAACTAAAGAGCCTTCTCTAGTTAATATTCAAGCTGAGCCAGAATTGTGTCCTCTAGCCATCGTGAAATACTACTTTCACTCATTAGAGAGAAACTCGGCTGATAAGAGAAAGTGGAAGTTGAAGGCGAAAAAACATCTGTTAGCAGAAGGATGGATCTTTGACTTCCCAACTGAAAGAAGGAAGACAACATTGTACAAGTCTCCGCAGAATCAGTGTTTAGGTACACTTCAAGGTGCATGCAGACTAtaccttaaagaaaaaattccCGAATGGACTAATTCTGATCAAGTTAATGGTGATGATCTATTGCCGAGTGTGTTCCAATTGCTTCAAAAAGAGCCTGAATTACATACTATAGATGGTACACTGCCAACTGAAAAGAGAAACTATAAACGCACAAGGACTTCAAAGGCTAGCGCACAAAAGGGTGTAGAGAATGAAGTACCTAACCGGGTGCTAAGATCAAGCAAAAGGGTGCAGAAGGTTTTGGGTTTGACACATCAAAAGCCTCAAAATGTTCTGTCATGGTTAATAGATTACAACGTTCTGTTACCAAAGTACAAGGTCTATTACCGGGAAACAGAAGGAGAAGGAAACTCCCCCACTGTTGAGGGGAGGATAAGTCGTGAAGGAATCAAATGCAGCTGTTGTCAGAAGATATATGGACTCAGCGGCTTTGCAAACCATGCCAGTGGAAGTAGTAACCGCAGGCCTTCGGCTTGTATCTTTTTGAAGGACGGCAGATCACTGTTAGACTGCATGAGGGAAGTAATGGAAGATCGCAGGGCAAGGGAAGTCATGGAGAAACAGTGCAATTATCTGTTTGAAGGCGAAAATGACAACATTTGTTCGGTTTGTAATTACGGCGGTGAACTTATTTTATGCGACCAATGCCCCTCAGCATTTCATCAGAAGTGTCTTAATTTGGAGGACATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGCGGGATTTGCAgccaaaacaaaattgaaaagacTAAGGATGGACATTTTCTTACTTGCATTCAGTGTGAACATAAATATCATGTTGAGTGCCTCGGAAATAGAGAAAAAGATAATTCAAGACGATATCAGGAAAATTGGTTTTGTGGAGAAGAGTGTGTAAGGGTCTATATGGGGCTCCAAAATCTATTGGGAAAGCCGGTTTTACTGGGTGAGGACAATCTAACTTGGACATTGGTGAAGTATGTCAACTCTGAGAACAGTGGTGATGGCAGTGCTGAAAATGAATTAGTAGCAGAGAGTTACACTAAACTCAGTGTTGCACTTTCGGTGATGCATGAATGTTTTGAACCCTTACATAACTCATTCTCTAGAAGGGATATTGTGGAAGATGTTATATTCAACCAAAGGTCTGAACTCAACCGGTTGAATTTCCAAGGTTTCTATACCGTACTGCTAGAGAGAAACGAAGAGTTGATTAGTGTGGCAACTATTAGGATATTTGGAGAGAAGATAGCAGAAGTGCCCCTTGTCGGTACAAGATTTCAGTATCGACGACTTGGAATGTGTCGTGTTTTAATGGATGAGCTTGAAAAGAAACTAAAGCAACTTGGAGTGGAGAGACTGGTTCTACCAGCTGTTCCTGGTGTGCTAGAAACTTGGACCAGTTCTTTTGGTTTTAAGCAGATGACGAACTTCGAGCGATCGCAGTTTTTGGACTACTCATTCCTAGATTTCCAAGGAACTGTGATGTGTCAGAAACTTTTGTCAAGACATCCATCACCAGAATCGGATGTGACTAGAGACGCAACTACTCGAAAAGAAGACGGTAGCTACTCTGtgaaatgtaaaattaattttgaaaaggCTAATCCAGTTTCTGAATTAGATCAAGCTGAAGGGATTGGCAAGGATATACAAGTTTGGAGACCAATGCCTAATTCCTAG 3270 0.4031 MDIHCILRSLEDGFLGSWHPGKIVRCGRKKRYVKYDNILNDDESDYLVEVVDVSSVFDGVNPSFGSDYVYERGLIRPLPPPIDLRIKDLPFGLCVDVNYQDAWWEGVIFDHYDGTKERSIFFPDLGDEMKVGVKQLRITQDWDESTDNWLPRGKWAFLELFEECERVSYVAVSVKQIWYDVRMRKDFAETIREWTCNVKEFWREMVVEVIGDYYTLTLNEVRLALNLPKNLLEGGSSEPSDNVHCDVASHGNAIGSDIGIANRPKENGDFSNMLDDDQNCGSTSLVPLVDEEVEKDSLLQEEPGSQNEISCYGVDVLDSDKNRRRRRSTSIIWKPLVLSEVEFCPGVINEYAVGCRSKTVRELLKTKVRKHLAYLGWTIEWTENNCPQNRRYRYKSPDIRDHKFYTSIFQVTKVLQEDSNMNSVRPQIDRNLSHLLCDPPQINRGLDVCPQTKEPSLVNIQAEPELCPLAIVKYYFHSLERNSADKRKWKLKAKKHLLAEGWIFDFPTERRKTTLYKSPQNQCLGTLQGACRLYLKEKIPEWTNSDQVNGDDLLPSVFQLLQKEPELHTIDGTLPTEKRNYKRTRTSKASAQKGVENEVPNRVLRSSKRVQKVLGLTHQKPQNVLSWLIDYNVLLPKYKVYYRETEGEGNSPTVEGRISREGIKCSCCQKIYGLSGFANHASGSSNRRPSACIFLKDGRSLLDCMREVMEDRRAREVMEKQCNYLFEGENDNICSVCNYGGELILCDQCPSAFHQKCLNLEDIPDGDWFCPSCRCGICSQNKIEKTKDGHFLTCIQCEHKYHVECLGNREKDNSRRYQENWFCGEECVRVYMGLQNLLGKPVLLGEDNLTWTLVKYVNSENSGDGSAENELVAESYTKLSVALSVMHECFEPLHNSFSRRDIVEDVIFNQRSELNRLNFQGFYTVLLERNEELISVATIRIFGEKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLETWTSSFGFKQMTNFERSQFLDYSFLDFQGTVMCQKLLSRHPSPESDVTRDATTRKEDGSYSVKCKINFEKANPVSELDQAEGIGKDIQVWRPMPNS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02852 1089 Pfam PHD-finger 733 775 IPR019787 -
Tsu05g02852 1089 SMART agenet_At_2 87 144 IPR014002 -
Tsu05g02852 1089 ProSiteProfiles Zinc finger PHD-type profile. 731 776 IPR019787 -
Tsu05g02852 1089 CDD PHD2_CHD_II 734 773 - -
Tsu05g02852 1089 Pfam Agenet domain 8 80 IPR008395 -
Tsu05g02852 1089 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 916 1013 IPR016181 -
Tsu05g02852 1089 Gene3D - 882 1027 - -
Tsu05g02852 1089 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 1084 - -
Tsu05g02852 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 776 830 IPR013083 -
Tsu05g02852 1089 SMART PHD_3 775 827 IPR001965 -
Tsu05g02852 1089 SMART PHD_3 733 774 IPR001965 -
Tsu05g02852 1089 Pfam Tify domain binding domain 656 707 IPR032308 -
Tsu05g02852 1089 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 869 1030 IPR000182 GO:0016407
Tsu05g02852 1089 PANTHER PHD ZINC FINGER PROTEIN 4 1084 - -
Tsu05g02852 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 775 IPR013083 -
Tsu05g02852 1089 CDD NAT_SF 925 985 - -
Tsu05g02852 1089 SMART ring_2 734 773 IPR001841 -
Tsu05g02852 1089 SMART ring_2 775 830 IPR001841 -
Tsu05g02852 1089 SUPERFAMILY FYVE/PHD zinc finger 711 774 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02852 Tsu-Chr5 38699930 38707131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02852 8 978 PHD Transcription Factor Family AT5G58610 36.620 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu05g02852 Agenet 1.6e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02852 - - gmx:102661511 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02852 05 38699930 38707131 Tsu05g02852 05 38699930 38707131 ECH
Tsu03g00879 03 8083867 8090415 Tsu05g02852 05 38699930 38707131 PCT