Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02846 atgACTGATGCTTTACTTGGAGTTGCTTTTGAGAATTTGATGTCTCAGCTTCAAAATGAATTTTCCACCATTTCGAGAATCAGTTCAAAGGCACACAAGCTATCAACCAACTTAGATCTGATCAAGGCTGTTCTAGAAGATGCTGAGAAGAAACAACTCACAAACCGCTCTGTTAAGGTATGGCTACAACAACTCAAAGATGCTGTATATGTGTTGGATGATATTCTTGATGAGTGTTCCATTAAATCCAAACGACTTAAGGGCTCATCCGCTTTCAAACCAAAGAATATCATTTTCCGCCATAACATTGGAAACAAGTTGAAAGACATTACAAGCAGATTCGATGAAATTGCTGACAGGAAGAACAAGTTTCTTCTACAAGAGGGTGTTACTGCTAAGGAAATGACAGTTGAAGTGGCTGAATGGCGTCAAACCAGCTCAATTATTGCTGAACCCAAAGTGTACGGACGAGAAGATGATAAAGAGAAGATTGTTGAGTTTCTTCTCAACCAAGTGAGGGACTCTAACTCCCTTTCAGTCTATCCCATTGTTGGCTTAGGTGGTGTTGGAAAAACAACTCTCACTCAATTGGTCTACAGTGATCCAAGGGTGAGTACTACCAATTTTCATACAAAGATATGGGTTTGTGTTTCTGAAGTTTTCTCGGTCAAGAGGATTCTATGTTCCATTATAGAATCTATCGATCGTCAGAAGTGTGATGCCTTGGATTTAGATGTAATACAAAGAAAGGTGCAAGAACTATTGCATGGTAAAAGATTTTTACTAGTTTTAGATGACGTTTGGAACAAAAATGAAGAACTGAAATTTGGATTGAGCCAAGAGAAATGGAACCAGTTGAAATCAGTGTTGTCCCGTGGATCCAAAGGTAGTTCTTGTTTAGTTTCCACCCGTGATGTGGTTGTTGCATCAATCATGGGAACATGTCACGCTCATCATTTGTATGGCCTCTCTGAAAATGAATGTTGGTTGTTATTCAAACAATATGCGTTTGGACATGACAGAGAAGAACAAGTAGAGCTCGTGGAAATAGGCAAGGAGATAGCAAAAAAGTGTGGGGGGTTGCCTCTTGCTGCACAAGCATTGGGAGGTCTAATGCGCTCTAGGAGTACAGAAAAAGAATGGCTTGAAATAAAAGAAAGCAGACTTTGGGATTCACCAACTGACAATGATGTTTTGCCAGCCTTGACATTGAGCTATTCTTATTTAACGCGGACCTTAAAGCAATGTTTCACTTTTTGA 1260 0.3952 MTDALLGVAFENLMSQLQNEFSTISRISSKAHKLSTNLDLIKAVLEDAEKKQLTNRSVKVWLQQLKDAVYVLDDILDECSIKSKRLKGSSAFKPKNIIFRHNIGNKLKDITSRFDEIADRKNKFLLQEGVTAKEMTVEVAEWRQTSSIIAEPKVYGREDDKEKIVEFLLNQVRDSNSLSVYPIVGLGGVGKTTLTQLVYSDPRVSTTNFHTKIWVCVSEVFSVKRILCSIIESIDRQKCDALDLDVIQRKVQELLHGKRFLLVLDDVWNKNEELKFGLSQEKWNQLKSVLSRGSKGSSCLVSTRDVVVASIMGTCHAHHLYGLSENECWLLFKQYAFGHDREEQVELVEIGKEIAKKCGGLPLAAQALGGLMRSRSTEKEWLEIKESRLWDSPTDNDVLPALTLSYSYLTRTLKQCFTF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02846 419 Pfam NB-ARC domain 157 386 IPR002182 GO:0043531
Tsu05g02846 419 Gene3D - 6 122 - -
Tsu05g02846 419 PANTHER OS05G0414200 PROTEIN 28 418 - -
Tsu05g02846 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 418 IPR027417 -
Tsu05g02846 419 Coils Coil 31 51 - -
Tsu05g02846 419 PANTHER DISEASE RESISTANCE PROTEIN RP 28 418 IPR044974 GO:0006952
Tsu05g02846 419 PRINTS Disease resistance protein signature 180 195 - -
Tsu05g02846 419 PRINTS Disease resistance protein signature 254 268 - -
Tsu05g02846 419 PRINTS Disease resistance protein signature 358 372 - -
Tsu05g02846 419 CDD RX-CC_like 11 119 IPR038005 -
Tsu05g02846 419 Gene3D - 322 410 IPR042197 -
Tsu05g02846 419 Gene3D - 137 317 IPR027417 -
Tsu05g02846 419 Pfam Rx N-terminal domain 6 100 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02846 Tsu-Chr5 38662724 38663983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02846 183 386 WRKY Transcription Factor Family AT5G45050 26.415 5.03e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02846 - - mtr:MTR_5g071220 610.142