Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02828 atgACTGATGCTTTACTTGGAGTTGCTTTTGAGAATTTGATGTCTCAGCTTCGAAATGAATTTTCCACCATTTCGAGAATCAGTTCAAAGGCACAAAAGCTATCAACCAACTTAGATCTGATCAAGGCTGTTCTAGAAGATGCTGAGAAGAAACAACTCACAAACCACTCTATTAAGGTATGGCTACAACAACTCAAAGATGCTGTATATGTGTTGGATGATATTCTTGATGAGTGTTCCATTAAATCCAACCGACTTAAGGGCTCATCCGCTTTCAAACCAAAGAATATCATTTTCCGCCATAACATTGGAAACAAGTTGAAAGACATTACAAGCAGATTCGATGAAATTGCTGACAGGAAGAACAAGTTTCTTCTACAAGAGGGTGTTACTGCTAAGGAAATGACAGTTGAAGTGGCTGAATGGCGTCAAACCAGCTCAATTATTGCTGAACCCAAAGTGTACGGACGAGAAGATGATAAAGAGAAGATTGTTGAGTTTCTTCTCAACCAAGTGAGGGACTCTAACTCCCTTTCGGTCTATCCCATTGTTGGCTTAGGTGGTGTTGGAAAAACAACTCTCACTCAATTGGTCTACAGTGATCCAAGGGTGAGTACTACCAATTTTCATACAAAGATATGGGTTTGTGTTTCTGAAGTTTTCTCGGTCAAGAGGATTCTATGTTCCATTATAGAATCTATCGATCGTCAGAAGTGTGATGCCTTGGATTTAGATGTAATACAAAGAAAGGTGCAAGAACTATTGCATGGTAAAAGATTTTTACTAGTTTTAGATGACGTTTGGAACAAAAATGAAGAACTGAAATTTGGATTGATCCAAGAGAAATGGAACCAGTTGAAATCAGTGTTGTCCAGTGGATCTAAAGGTAGTTCTTGTTTAGTTTCCACCCGTGATGAGGTTGTTGCATCAATCATGGGAACGTGTCACGCTCATCATTTGTATGGCCTCTCTGAAAATGAATGTTGGTTGTTATTCAAACAATATGCGTTTGGACATGACAGAGAAGAACAAGTAGAGCTGGTGGAAATAGGCAAGGAGATAGCAAAAAAGTGTGGGGGGTTGCCTCTTGCTGCACAAGCATTGGGAGGTCTAATGCGCTCTAGGAGTACAGAAAAAGAATGGCTTGAAATTAAAGAAAGCAGACTTTGGGATTCACCAACTGACAATGATGTTTTGCCAGCCTTGACATTGAGCTATTCTTATTTAACGCGGACCTTAAAGCAATGTTTCACTTTTTGTGCTATATTTCCCAAAGATACAATAATGTTGAAGGAAGAATTGATTCATCTTTGGATGGCTCATGGATTTATTTCATCTAGGAAATATTTGGAAGTTGAAGATGTTGGTAGGATGATTTGGAATGAATTATGCCAAAAATCATTCTTTCAAAACATTATGATGGATGGTTATGCTGGAGACATGTCATTCAAGATGCATGATCTTGTCCATGATCTTGCTCAATCAATAATGGGGCAAGAATGTTTGTATTTGGAGGATGCAAACATGACAAGTTTGTCAAAAAGCATACATCACATAAGTACTGTTCACTCCAATGGCTTGTTATCAATCGATGAGGGAGCCTTCAAAAAAGTTGAATCCTTGCGAACATTTTTCCAATTTAACCAATATACTAGAAATACACTTCATTACTTCCCAACAAACCGTTTTCTTCGGGTTTTACGCACATCCTTTATCCATGTACCGTCACTAGGGAGATTAATTCATTTAAGGTATTTGGAACTTTGTTGCCGTGACATGGAAACGTTGCCTGACTCAATTTACAACTTACAAAAATTGGAAATCTTGAAAATAAAAGGTTCCCATAAACTGAGTTGCCTTCCAAAACACTTGGCTTGCTTACAAAATCTTAGACATCTAGATATAGATGATTATAGTTCTTTGTCTTGCTTGTTTCCAAACATTGGAAAAATATCTTGTCTAAGAACATTAAGTTTATACATTGTTAGTTTAGAGAAAGGTAATAGCTTGGTAGAGTTACGTGATCTAAACCTCGGTGGAGAACTGAGTATCAAAGGCTTAAATAATGTGGGCAGTTTATCAGAAGCTCAAGAGGCCAATTTGATGTGTAAAAAAGACCTTCAAGTATTAAAGGATTGCAACAAATGTGTGCGGCTTCCGTCAACTAGTAAATTAATATCTCTAAAACGACTCGAATTAAGAAATATGGTTAGTCTTAAATACTTGAATGATGAGTCTCATGATGGTATGGGATTCCCATCTCTGGAGGTACTCTGGTTGAGTGACTTACCAAACATAGAGGGGTTATTGAAAGTGGAAAGAGGGGAGATGTTTCCTTGTCTTTCTTATTTGTATATCTCTTCTTGCCCTAAACTTGGACTGCCATATCTTCCATCTCTTAAAGACCTCACTGTGCGGGAATGTAACAATGATTTACTGAGGTCAATCTCTACCTTCTGTAGTCTTACCAACCTTGACCTCAGTAGGGGCGAAGGAATAACATCCTTCCCTGAGGGGATGTTCACAAACCTTACTTGTCTTCAAACTCTGGAAATAGGTAATTTTCCAAAATTGAAGGAGTTACCAGATGAACCCTTTAACCTAGCTTTGGAGAATCTGAGCATCTCTGCGTGTAATGAGCTTGAGTCTTTACCAGAGCTAATTTGGGAAAGTCTACAATCCCTTCGATCTCTAAGAATTTTGAGGTGTAATGAATTGCAATGGTTGCCAGAGGGTATTCGACACCTCACTTCTCTTGAGACTCTGACAATTATGGAATGTCCAACATTAGAGGAACGATGCAAGGAGGGAACAGGGGAGGACTGGGACAAGATAGCACATATTCCAAAATTAAAGATTGGGTGGCCATGA 2871 0.3845 MTDALLGVAFENLMSQLRNEFSTISRISSKAQKLSTNLDLIKAVLEDAEKKQLTNHSIKVWLQQLKDAVYVLDDILDECSIKSNRLKGSSAFKPKNIIFRHNIGNKLKDITSRFDEIADRKNKFLLQEGVTAKEMTVEVAEWRQTSSIIAEPKVYGREDDKEKIVEFLLNQVRDSNSLSVYPIVGLGGVGKTTLTQLVYSDPRVSTTNFHTKIWVCVSEVFSVKRILCSIIESIDRQKCDALDLDVIQRKVQELLHGKRFLLVLDDVWNKNEELKFGLIQEKWNQLKSVLSSGSKGSSCLVSTRDEVVASIMGTCHAHHLYGLSENECWLLFKQYAFGHDREEQVELVEIGKEIAKKCGGLPLAAQALGGLMRSRSTEKEWLEIKESRLWDSPTDNDVLPALTLSYSYLTRTLKQCFTFCAIFPKDTIMLKEELIHLWMAHGFISSRKYLEVEDVGRMIWNELCQKSFFQNIMMDGYAGDMSFKMHDLVHDLAQSIMGQECLYLEDANMTSLSKSIHHISTVHSNGLLSIDEGAFKKVESLRTFFQFNQYTRNTLHYFPTNRFLRVLRTSFIHVPSLGRLIHLRYLELCCRDMETLPDSIYNLQKLEILKIKGSHKLSCLPKHLACLQNLRHLDIDDYSSLSCLFPNIGKISCLRTLSLYIVSLEKGNSLVELRDLNLGGELSIKGLNNVGSLSEAQEANLMCKKDLQVLKDCNKCVRLPSTSKLISLKRLELRNMVSLKYLNDESHDGMGFPSLEVLWLSDLPNIEGLLKVERGEMFPCLSYLYISSCPKLGLPYLPSLKDLTVRECNNDLLRSISTFCSLTNLDLSRGEGITSFPEGMFTNLTCLQTLEIGNFPKLKELPDEPFNLALENLSISACNELESLPELIWESLQSLRSLRILRCNELQWLPEGIRHLTSLETLTIMECPTLEERCKEGTGEDWDKIAHIPKLKIGWP 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02828 956 CDD RX-CC_like 11 119 IPR038005 -
Tsu05g02828 956 Pfam Rx N-terminal domain 6 100 IPR041118 -
Tsu05g02828 956 SUPERFAMILY L domain-like 484 792 - -
Tsu05g02828 956 PANTHER DISEASE RESISTANCE PROTEIN RP 29 932 IPR044974 GO:0006952
Tsu05g02828 956 PANTHER OS05G0414200 PROTEIN 29 932 - -
Tsu05g02828 956 Gene3D Ribonuclease Inhibitor 498 792 IPR032675 -
Tsu05g02828 956 Gene3D - 322 410 IPR042197 -
Tsu05g02828 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 420 IPR027417 -
Tsu05g02828 956 Coils Coil 31 51 - -
Tsu05g02828 956 Gene3D - 411 495 IPR036388 -
Tsu05g02828 956 Gene3D - 137 317 IPR027417 -
Tsu05g02828 956 PRINTS Disease resistance protein signature 180 195 - -
Tsu05g02828 956 PRINTS Disease resistance protein signature 914 930 - -
Tsu05g02828 956 PRINTS Disease resistance protein signature 358 372 - -
Tsu05g02828 956 PRINTS Disease resistance protein signature 254 268 - -
Tsu05g02828 956 Pfam NB-ARC domain 157 386 IPR002182 GO:0043531
Tsu05g02828 956 Gene3D Ribonuclease Inhibitor 793 938 IPR032675 -
Tsu05g02828 956 Gene3D - 6 122 - -
Tsu05g02828 956 SUPERFAMILY L domain-like 720 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02828 Tsu-Chr5 38514322 38518645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02828 183 760 WRKY Transcription Factor Family AT5G45050 22.360 6.29e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02828 - - mtr:MTR_5g071220 1204.89