Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02817 ATGGGGTATGAGAATGGTAATAAAGAAGGGAAGCATCATGAGATTTCTTCTTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGTTTCAAAGATGTGGTTGAAAACGAGGGTTGTGACGTTGATGAGGTTGGTTTGTGGTATGGAAGGAGCGTTTGTTCGAAAAAATTAGGTTATGAAGAAAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGTTTGGATGTATTGGCTTATATTCTTGGAACAGGCCGCGTTGATGTTAATCGGTCTTGTGGATCCGATGCTGCTACTGCTCTTCATTGCGCTGTTGCTGGTGGTTCTGCTGCTTCCGCAGAGATTATCAAGCTTTTGCTTGATGCATCTGCGGATCCTAGTGTTGTTGATGCCAACGGTAACCGACCGGTTGACTTGATTGTTTCTGGGGCCAATTCTATCTTCAATCCGAGGAAGAGGATGCTGCAAGTTCTTTTGGAGGGTACGGTTGGTGGTGCTGATCAGACATTTCTTGCATTTCCGGAGACAATTGACGTTGTTGATGAATATCCAAGGCAAGATATAAACACGCCTCGTGTTTCGAAAGATTATCCTGTTGATCTCTCTCTTCCAGACATAAAGAACGAGTTATATAGTACCGATGAATTTAGGATGTATACATTCAAAGTTAAGCCTTGCTCAAGGGCGTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCAAGGAAATACCATTATAGCTGTGTCCCTTGTCCTGAGTTTCGCAAAGGATCGTGCAGCAAAGGAGATTCATGTGACTATGCACATGGGATTTTTGAGTGCTGGCTTCATCCTGCTCAGTATCGTACACGTCTTTGCAAGGATGAGACTTCATGCACAAGAAGAGTTTGCTTCTTTGCTCACAGGATTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCGTCTCCTAGGTCATATTACAGTACTGCTTCTACATTGGAAATGGGTTCGCTTACCCCAATGTCACATGGTTCTCCATCGGTTTTGATACCGCCATCCTCAACGCCGCCTTTGACTCCATCTGGAGCATCGTCACCCGTTGCTGCTACAGCCATGTGGCAGACACAGTCTAATGTTTCAGTCCCTAGCCTACAGCTTCCCAAAAGCAGGTTCAAGACTGGAATGACCGCTAGAGATATTGATTCAGAAATTGCAATGCTTCGGAAGCAACTAATGATGGACGAGATATCCGGTCTTCCCTCACCATCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTTGAGCGATCATAATACCAGAGAACTAAATAGGTTTTCGGGGGTGATGCCTACTAACCTTGAAGACATTTACGGATCGCTTGATCCATCAATGTTGCACAAATTCCACGGAATCTCACTTGATTCTGCAGGATCTCAGTTACAATCTCCGACTGGAATCCAGATGCGTCCCAATATGAATCAGCAGCTACAAAACTATTCTTCAGGCCATTCGACTTCGAGTAGGACTGGGTCGCCACCCTATGGGTTTGTTCCATCCGGGGATTTATCTGCAGCGGCTTTAAATTCAAGAGCTGCTGCCTTTTCTAAGCGGAGCCAGAGCTTTATCGAGCGCAATGTGGCAAACTGTCATTCTGAGCATCTTTCTCCTGTGAATCCTTACGCTTTTCCTAACTGGGGCTCACACGATGGGAAATTGAATTGGACAGTACAGGGCGAAGAACTGAATAAGATGAGGAAATCGTCTTCTTTTGGATTTCTAAGCAGCAATACTCCTTTAAATCCAGCTGCAACTAGAGCACAGGAAAATGCCGACGAACCAGATGTATCTTGGGTTAATTCACTTGTAAAGGACGCTACACCGCAGGAATCAGGTCGGTTTAGTACTGAAGATCAGAAAAGGAAACAATACAATCTTAACAATGGATCCGATGCGATTCCAGCTTGGTTGGAGCAATTGTACATTGATCAGGAACAAACTGTGCATTGA 2040 0.449 MGYENGNKEGKHHEISSLLEFSAADDVIGFKDVVENEGCDVDEVGLWYGRSVCSKKLGYEERTPLMVAAMFGSLDVLAYILGTGRVDVNRSCGSDAATALHCAVAGGSAASAEIIKLLLDASADPSVVDANGNRPVDLIVSGANSIFNPRKRMLQVLLEGTVGGADQTFLAFPETIDVVDEYPRQDINTPRVSKDYPVDLSLPDIKNELYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDETSCTRRVCFFAHRIEELRPLYASTGSAIPSPRSYYSTASTLEMGSLTPMSHGSPSVLIPPSSTPPLTPSGASSPVAATAMWQTQSNVSVPSLQLPKSRFKTGMTARDIDSEIAMLRKQLMMDEISGLPSPSNWKNSMPNSPSFPVSLSDHNTRELNRFSGVMPTNLEDIYGSLDPSMLHKFHGISLDSAGSQLQSPTGIQMRPNMNQQLQNYSSGHSTSSRTGSPPYGFVPSGDLSAAALNSRAAAFSKRSQSFIERNVANCHSEHLSPVNPYAFPNWGSHDGKLNWTVQGEELNKMRKSSSFGFLSSNTPLNPAATRAQENADEPDVSWVNSLVKDATPQESGRFSTEDQKRKQYNLNNGSDAIPAWLEQLYIDQEQTVH 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02817 679 SMART ANK_2a 60 90 IPR002110 GO:0005515
Tsu05g02817 679 SMART ANK_2a 95 127 IPR002110 GO:0005515
Tsu05g02817 679 Pfam Ankyrin repeats (many copies) 61 119 IPR002110 GO:0005515
Tsu05g02817 679 Gene3D - 254 317 - -
Tsu05g02817 679 PANTHER UNKEMPT FAMILY MEMBER 7 676 IPR045234 -
Tsu05g02817 679 MobiDBLite consensus disorder prediction 507 524 - -
Tsu05g02817 679 ProSiteProfiles Zinc finger C3H1-type profile. 259 281 IPR000571 GO:0046872
Tsu05g02817 679 SMART c3hfinal6 289 312 IPR000571 GO:0046872
Tsu05g02817 679 SMART c3hfinal6 254 280 IPR000571 GO:0046872
Tsu05g02817 679 SUPERFAMILY Ankyrin repeat 36 145 IPR036770 -
Tsu05g02817 679 Gene3D - 8 162 IPR036770 -
Tsu05g02817 679 MobiDBLite consensus disorder prediction 507 527 - -
Tsu05g02817 679 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Tsu05g02817 679 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 7 676 - -
Tsu05g02817 679 MobiDBLite consensus disorder prediction 349 371 - -
Tsu05g02817 679 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Tsu05g02817 679 MobiDBLite consensus disorder prediction 637 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02817 Tsu-Chr5 38415718 38418660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02817 13 674 C2H2 Transcription Factor Family AT5G12850 39.972 2.75e-151 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu05g02817 Ank_4 1.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02817 - - aprc:113846970 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02817 05 38415718 38418660 Tsu05g02817 05 38415718 38418660 ECH
Tsu05g02817 05 38415718 38418660 Tsu03g00888 03 8194130 8196055 ECH