Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02809 atggGTGGAAATGGTAAGCACAGATGGAAAATCTCCTTCCATCGTTCTTCCTCTCATTCTAGTAGAAACTCACAACCCCCCAAAGAGTTTCTATGTCCTATTACCGGTTCATTAATGTCCGACCCTGTCGTTGTTACTTCGGGTCAAACCTTCGAACGTCTCGCCGTCGAAATCTCCACCGAATTAAAATTCATCCCTAAGTTAGAAGACGGAACCCGACCCGATTTCTCAACAATCATCCCCAATTTAGCTATCAAAACAACCATAACAAACTGGTGCGACAAATCCCGCACCCAATACCCTCCCGCACCTGATTACACCACCGTGGAGAAGCTTATTAGAGAAGCAATGGCTGCTGCGGCGGCGGAGAAGGAGAAGGAAGATCCAATAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCACCGGTGATATTCTCCCACGCTGCCACTGAGTTAGGGCCGCGTGTCAACCGGTTCAACTCGGGATCTTCCTCTGAGGAATCAGTGATAATCGGGGAAAGTCCTGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTCtctccttcttcatcttcttcgttTGAGATCGAAGTTCAAAACCCTAACGTTCCTCCTtcggaagaagaagaaactttactgaagaagatgaagagcaACGAGGTTTTTGAACAAGAACAAGGAGTTATTACTCTTAGAAGTATAACTAGGAGCAGAGAAGAAGCTAGGGTTTCGCTATGTACGTCGCGGATTCTCGCGATTCTGCGTTCTCTGATTGCTTCTCGTTACGTCGTCGTTCAGGTCAACGCTATTGCTTCTTTGGTCAACCTTTCGCTTGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGTTTCTTATTGATGTGTTGAAAGGGGGATCCAGTGAGTCGCAGGAACATGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATTGGTGTTCTCGGCGCGTTGCAGCCGCTAATGCATGCACTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCACTTGCGCTCTATCATTTGACTCTAGTTCAGAGTAACAGAGTCAAGCTTGTGAAACTCGGGGTGGTTCCGACTTTGCTTTCGATGGTGATGACAGGGACGATGGCGAGTAGGGTGTTGTTGATTTTATGCAATCTTGCTATGTCTGTGGAGGGAAGAACTGCAATGCTGGACGCCAATGCGGTGGAGTGTATGGTGAGTTTGTTGAGGGGGAACGAGTTGGACTCGGAGGCGACTCGAGAAAATTGTGTAGCGGCGTTGTATGCGTTGAGTCATGGAAGTTTGAGATTCAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTGAGGGTGATTGAAGAGACAGGGACGGAGAGGGCGAGGGAGAAGGCTAAAAGGGTGTTGCAGAAGATGAGGGGGtttgaagatggtgatgatgaagatgattctgGGTTTGATAGTCTTTTTGAATCGAGCGGGTTGACTCGAACGAGGTACCGAGGTGCTGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG 1590 0.4579 MGGNGKHRWKISFHRSSSHSSRNSQPPKEFLCPITGSLMSDPVVVTSGQTFERLAVEISTELKFIPKLEDGTRPDFSTIIPNLAIKTTITNWCDKSRTQYPPAPDYTTVEKLIREAMAAAAAEKEKEDPIKELLNAVADNPPVIFSHAATELGPRVNRFNSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPPSEEEETLLKKMKSNEVFEQEQGVITLRSITRSREEARVSLCTSRILAILRSLIASRYVVVQVNAIASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDDSGFDSLFESSGLTRTRYRGAGARNNNLVNSTTF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02809 529 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Tsu05g02809 529 SUPERFAMILY ARM repeat 213 485 IPR016024 -
Tsu05g02809 529 Pfam U-box domain 27 96 IPR003613 GO:0004842|GO:0016567
Tsu05g02809 529 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Tsu05g02809 529 SMART arm_5 322 362 IPR000225 GO:0005515
Tsu05g02809 529 SMART arm_5 402 445 IPR000225 GO:0005515
Tsu05g02809 529 SMART arm_5 281 321 IPR000225 GO:0005515
Tsu05g02809 529 SMART arm_5 240 280 IPR000225 GO:0005515
Tsu05g02809 529 PANTHER U BOX DOMAIN-CONTAINING 1 518 - -
Tsu05g02809 529 SUPERFAMILY RING/U-box 12 101 - -
Tsu05g02809 529 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Tsu05g02809 529 Gene3D - 207 486 IPR011989 -
Tsu05g02809 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Tsu05g02809 529 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 518 - -
Tsu05g02809 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 329 IPR000225 GO:0005515
Tsu05g02809 529 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02809 Tsu-Chr5 38252318 38254500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02809 1 529 U-box Gene Family AT5G65200 56.172 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02809 - - gmx:100784564 741.495