Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02798 ATGCCTCAATTCGGTTGTAGCATTGAGAAATTAATCTCGGTGACACCAGATGATTACCGTTGTCCGATTTCTCTCGAGATAATGTTAGATCCTGTAACCGTTTCCACTGGCCAAACATATAATAGAGCTTCAATTCAGAAATGGTTTGAAGCTGGAAACATGACATGTCCGAAAACCGGGGAGAGACTCATCTCCACAGAGTTTTTTCCCAACCTAGCACTGAAAAATCTTATCCAACAATTCTGTTATGATAACGGCATTTCAATTTTAACTAACAAATCTCATAGCATAACTGCAACAACTGTTAGTCCTGGTAGTTTGGCTGCAGCTCACGCAATACAGTTCGCGTCATGGTCACTTGCTCGGAGACTAGTTTTCGGAACAGATGAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTACTTGCAAAATCAAATGTTTTTAATACCGCGTGTTTGGTTGAGAATGGAACTGTACCGCCGTTGCTTGATCTTGTATTAACTTCAACGATGCAAGAGAATGCGATTTCTGCTCTTTTGAAGCTTTCAAAGCATAGTAATGGCCGCGAAGTTATCATGGAGAGTCGAGGTTTAAAACCTATTGTTAAGGTTCTCAATAGAGGGTACAGTTTAGAAGCTCGTCGTGTTGCAGCTGGTATAATATTTTATCTCACTTCGGTGAAAGAGTATAGAAAATTAATAGGTGAAAATTCAGAGGCTGTTTCTGGTTTAGTGAAATTGATAAAGGAAGGAACAATTCGAGGAAAAAAGAGTGCAGTGGATGCAATTTTCGGGTTGTTATTGCTTGCTAAGAATCATTCTAAGGTGCTTGCTTCTGGTGTTGTTCCTGTGATTATTAACGTTTTGGCTTCTTCTGATAAACGTTATGTTGTTAATGATTGTTTAGCCGTTTTGGTAGCATTAGCGGAGAGTGTGGAAGGCTCTCGTGCGGTATTAGAATGTTCAGGTTTTGGTTTGGTTGTTAGGATTTGGCAATCTGCAACTTCGCGTGCAGAAAAGGAGTACTGTGTTTCAATTTTGTCGTCGCTGTGTGTTAATATTGGTGTGGAAGTTGTTGATGTTCTGGCTAAGGATGCTTCCGTTGTTATGCCTTTGCTTTATTCACTTCTTACGGATGGTACTCCTCAAGCGGAAAAGAAAGCACGTAGACTTATTAATGTCTTGCAAGAATTTGATGAGAAGAAAACTTCGGGAATGGTGGATTCTTCTGTTATGCAGCAAAGATTGCTTCAGCTGAATTAG 1263 0.3983 MPQFGCSIEKLISVTPDDYRCPISLEIMLDPVTVSTGQTYNRASIQKWFEAGNMTCPKTGERLISTEFFPNLALKNLIQQFCYDNGISILTNKSHSITATTVSPGSLAAAHAIQFASWSLARRLVFGTDEQKNKAAYEIRLLAKSNVFNTACLVENGTVPPLLDLVLTSTMQENAISALLKLSKHSNGREVIMESRGLKPIVKVLNRGYSLEARRVAAGIIFYLTSVKEYRKLIGENSEAVSGLVKLIKEGTIRGKKSAVDAIFGLLLLAKNHSKVLASGVVPVIINVLASSDKRYVVNDCLAVLVALAESVEGSRAVLECSGFGLVVRIWQSATSRAEKEYCVSILSSLCVNIGVEVVDVLAKDASVVMPLLYSLLTDGTPQAEKKARRLINVLQEFDEKKTSGMVDSSVMQQRLLQLN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02798 420 CDD RING-Ubox_PUB 19 61 IPR045210 -
Tsu05g02798 420 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 197 IPR000225 GO:0005515
Tsu05g02798 420 Pfam U-box domain 16 85 IPR003613 GO:0004842|GO:0016567
Tsu05g02798 420 Gene3D - 108 418 IPR011989 -
Tsu05g02798 420 SUPERFAMILY RING/U-box 11 88 - -
Tsu05g02798 420 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Tsu05g02798 420 PANTHER U BOX DOMAIN-CONTAINING 13 405 - -
Tsu05g02798 420 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Tsu05g02798 420 SMART arm_5 185 226 IPR000225 GO:0005515
Tsu05g02798 420 SMART arm_5 146 184 IPR000225 GO:0005515
Tsu05g02798 420 PANTHER OS07G0532750 PROTEIN 13 405 - -
Tsu05g02798 420 SUPERFAMILY ARM repeat 127 396 IPR016024 -
Tsu05g02798 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02798 Tsu-Chr5 38128137 38129542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02798 17 418 U-box Gene Family AT1G10560 41.220 3.29e-92 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02798 - - gmx:100810963 515.383