Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02796 ATGGAGATTGTAATTTCTTTGATAATCTTATTTGTTGGGATTGGTATTTTGGTGTCTATTCATTTCTGCATAGTTGGGAGAGCATTCAGAAGGGATAATAATAGTGGAGACATTCAAGGGCAGAATAGTAGTAGTACTAGGAACACTTCAAAAGGAATGTTTGGTGGTGACTTGAAGAACCTTCCTTGTTTTGATTATGTGGAACCACAAGAGAAAGGATACAACAACCTTGTAGATTGTGCTGTTTGTTTGGAGAGTTTTAAGGTTGGTGATGCTTGCAGATTGTTGCCTAAATGCAGACACAGTTTTCATGTTCAATGTATAGATTTGTGGATTCTCAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTCATTCACATGTAATTGTGAGAGAAGAAAGTGTTGCTTCTGGTTCTGATATTGTAGAAATTGAAATGCCATAA 447 0.3647 MEIVISLIILFVGIGILVSIHFCIVGRAFRRDNNSGDIQGQNSSSTRNTSKGMFGGDLKNLPCFDYVEPQEKGYNNLVDCAVCLESFKVGDACRLLPKCRHSFHVQCIDLWILKTPFCPICRTWVHSHVIVREESVASGSDIVEIEMP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02796 148 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 145 - -
Tsu05g02796 148 SMART ring_2 80 121 IPR001841 -
Tsu05g02796 148 Pfam Ring finger domain 79 122 IPR001841 -
Tsu05g02796 148 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Tsu05g02796 148 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 145 - -
Tsu05g02796 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 127 IPR013083 -
Tsu05g02796 148 SUPERFAMILY RING/U-box 79 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02796 Tsu-Chr5 38118319 38118765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02796 50 126 C3H Transcription Factor Family AT4G30370 44.156 1.84e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02796 - - gmx:102662620 180.259