LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g02795	ATGATGGAAAAGAGTGATGGGTTTGTAAGAGCTGATCTAATTGATCTCAAGAGCATAGATGAACAACTTGAGAAACATCTCAACAGAGCATCATTGACTATAGATCATCATGATCATCATAAGATGAAGCAGAGAGAAGAAGATATTAATGGTGATGTTTTGAACAAGCAAAGACAAGAGTGGGAAATTGACCCTTCTAACCTTATCATCAAGAGTGTTATAGCTCGTGGCACTTTTGGAACTGTTCACCGTGGTATCTATGATGGTCAAGATGTTGCTGTTAAAATGTTGGACTGGGGCGAAGAAGGGCACCGGACAGAAGCTGAAATTGCTGCACTGAGGTCGGCATTCACGCAAGAAGTTGTTGTTTGGCATAAACTTGATCATCCTAATGTCACTAAGTTTATCGGAGCAACAATGGGATCTTCTGATTTACAGATACAAACTGAGAATGGTCTAATTGGCTTGCCAAGCAATATCTGCTGTGTGGTTGTAGAGTATCTTCCTGGAGGTGCACTGAAATCCTTCTTAATAAAAAACAGGAGAAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATATGGCGCGAGGACTGAATTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTAAAGACGGAGAATATGTTGTTGGATAAGACGCGCGAAGTTAAAATTGCTGATTTTGGTGTTGCTCGTATTGAAGCCTCGAATCCAAATGACATGACCGGGGAGACTGGTACACTCGGTTACATGGCTCCTGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTATATAGTTTCGGCATATGTTTATGGGAAATATATTGTTGCGACATGCCATATCCCGACTTAAGTTTCTCGGAGATTACTTCAGCCGTTGTTCGCCAGaatGTTAGACCAGAGATACCAAGATGTTGTCCAAGTTCTGTGGCAAATGTAATGAAGAAATGTTGGGATGCGAATCCCGATAAGCGACCTGAAATGGATGAGGTAGTTGCCATGCTGGAAGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTCCTGATCAGCAACAAGGTTGTCTCTGCCTCCGTAAACGCCGCGGGCCTTGA	1116	0.4265	MMEKSDGFVRADLIDLKSIDEQLEKHLNRASLTIDHHDHHKMKQREEDINGDVLNKQRQEWEIDPSNLIIKSVIARGTFGTVHRGIYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVVVWHKLDHPNVTKFIGATMGSSDLQIQTENGLIGLPSNICCVVVEYLPGGALKSFLIKNRRRKLAFKVVIQLALDMARGLNYLHSQKIVHRDVKTENMLLDKTREVKIADFGVARIEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNVRPEIPRCCPSSVANVMKKCWDANPDKRPEMDEVVAMLEAIDTSKGGGMIPPDQQQGCLCLRKRRGP	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g02795	371	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	209	221	IPR008271	GO:0004672\|GO:0006468
	Tsu05g02795	371	PANTHER	-	1	365	-	-
	Tsu05g02795	371	PIRSF	ILK	21	351	-	-
	Tsu05g02795	371	SUPERFAMILY	Protein kinase-like (PK-like)	55	342	IPR011009	-
	Tsu05g02795	371	SMART	serkin_6	68	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g02795	371	CDD	STKc_MAP3K-like	74	342	-	-
	Tsu05g02795	371	PRINTS	Tyrosine kinase catalytic domain signature	269	291	IPR001245	GO:0004672\|GO:0006468
	Tsu05g02795	371	PRINTS	Tyrosine kinase catalytic domain signature	203	221	IPR001245	GO:0004672\|GO:0006468
	Tsu05g02795	371	PRINTS	Tyrosine kinase catalytic domain signature	165	178	IPR001245	GO:0004672\|GO:0006468
	Tsu05g02795	371	PRINTS	Tyrosine kinase catalytic domain signature	313	335	IPR001245	GO:0004672\|GO:0006468
	Tsu05g02795	371	ProSiteProfiles	Protein kinase domain profile.	68	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g02795	371	Gene3D	Transferase(Phosphotransferase) domain 1	168	359	-	-
	Tsu05g02795	371	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	1	365	-	-
	Tsu05g02795	371	Pfam	Protein tyrosine and serine/threonine kinase	70	342	IPR001245	GO:0004672\|GO:0006468
	Tsu05g02795	371	Gene3D	Phosphorylase Kinase; domain 1	56	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g02795	Tsu-Chr5	38109264	38112479	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g02795	4	371	MAP Kinase Kinase Kinase	AT3G22750	65.416	0.0	529

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Tsu05g02795		PK_Tyr_Ser-Thr	2.4e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g02795	-		-	gmx:100791455	654.825