Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02775 ATGGTTCGAATCGAGAAGGCAAAGGTTGATGACAAGTTCACTGATGTTTGTGAAATTGATGTTGGTAAAGAAGATTTGTGTATTAAGGTGAGGGTGATTTGCATGTGGAAGGTTCCTCAATTTAGCAATCCGTCTGAGTTCAGTTCACTTGAGATGGTTTTGATGGATGAGAAGCATGGGAAAATCCATGCATCTGTTAGGAGGCAtcttatttatatgtttgagGGAAAGCTTGAAGAGGACAAAGTATATGAGATATCTGGTTTCTCTATTTTCCCTGAAACTAGGTTTTATCGTCCAACTCTGCATCCATATAAAATTTTGTTCCTGCTTAAGACAAGGGTCAGGCCATCTGAGAGTTCGTCAATTCCTGAGCTTGATGTCATTGGTGTGATGACTGGTATGTCTGCTGAAAGAGAGTATTTAAGGGATGACAAGATTACTAAGATGGTTATAGTTGAATTAACGGATCACACATGGTGTGttattgtttgtttggtttgcAAGGGTAAGTGTGAGTGTGCATTGTTTGGTGATTATGCTGATGATTTGGCAAAGAAGATGGGAAAATCGACATCTGGTTTACCTATTGTTGTTATCCAATTTGCCAAATTGAAGATTTTCAGGgATAAGGCATCTATTCAGAATGTGATGAATACTACTATGATACTTATTAATCCAGATATTCCAGATGTTGAGTCATTTAAGAATAGTATTGTTGTTCATGGAATTGATAGTGGTAGCAGTGTTACACTCATTGGAGATCGTGGGAAGCCTTCTCTTGAAGAAGAATTTCTTCGTATGCACCCCAAGAAAACTGTTTCTGAATTGGTTGATGTTGCTGAGGATGGTGTGTTTGTTGTGTGTGCTGAGGTGGTTGGGATAGTTTATGGGCAAGATTGGTGGTATCCAGCTTGCAGATGTCACAAGAGTGTTATTCCTGATTCAGGGGCTTATTTCTGCACTGCTTGTGATAGGCATGTTTTTCAAGTTGTACTCAGGTTTAGAGTGAAATTTGAAGTTTCTGATCGTAGTGGTACTTGTGTTTTAGTGGTGTTTGATTCTGAGATGTGTTATATGATGGAAAAATCTTGTGCTTTTTTTGTTGCTCAGTCTAAGAAATCAGTGAGGCAATCAGTTACAATGGATGGATCCTATAGGGTTAAGAGAATCTGTGTTAATCCTACTATCATTGAAGAATTCTGTTCTCATGTTGGCTTTGTGACTCCTACAAAGAAAATCTCTCCTACTATTGATGTTGAGTCAGATGGTGTGAGTGGTCATAGTAATGCTGATGAAGATTCTCAATCTGTTGAGTTTATGAAAGAACTTATTGTAAGTCCTCCTGCTGCAAATGAAGTTGATGGGAATGATAGTGATGATCCTTTTATTCTTAAGAGGAATTTAAACAAGGCTTTTGATGAAGTTGGTGGTTCCAAATCTACTCTTCCTCTAAAGAAAGTGAAGATTGAGAAGGATTAA 1482 0.3718 MVRIEKAKVDDKFTDVCEIDVGKEDLCIKVRVICMWKVPQFSNPSEFSSLEMVLMDEKHGKIHASVRRHLIYMFEGKLEEDKVYEISGFSIFPETRFYRPTLHPYKILFLLKTRVRPSESSSIPELDVIGVMTGMSAEREYLRDDKITKMVIVELTDHTWCVIVCLVCKGKCECALFGDYADDLAKKMGKSTSGLPIVVIQFAKLKIFRDKASIQNVMNTTMILINPDIPDVESFKNSIVVHGIDSGSSVTLIGDRGKPSLEEEFLRMHPKKTVSELVDVAEDGVFVVCAEVVGIVYGQDWWYPACRCHKSVIPDSGAYFCTACDRHVFQVVLRFRVKFEVSDRSGTCVLVVFDSEMCYMMEKSCAFFVAQSKKSVRQSVTMDGSYRVKRICVNPTIIEEFCSHVGFVTPTKKISPTIDVESDGVSGHSNADEDSQSVEFMKELIVSPPAANEVDGNDSDDPFILKRNLNKAFDEVGGSKSTLPLKKVKIEKD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02775 493 Gene3D - 11 114 IPR012340 -
Tsu05g02775 493 Gene3D - 115 244 IPR012340 -
Tsu05g02775 493 Pfam Domain of unknown function DUF223 51 120 IPR003871 -
Tsu05g02775 493 CDD RPA1_DBD_A_like 27 115 - -
Tsu05g02775 493 CDD RPA1_DBD_B_like 127 236 - -
Tsu05g02775 493 SUPERFAMILY Nucleic acid-binding proteins 12 120 IPR012340 -
Tsu05g02775 493 PANTHER REPLICATION FACTOR A 1, RFA1 24 366 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu05g02775 493 Gene3D - 262 388 IPR012340 -
Tsu05g02775 493 Pfam Replication factor-A C terminal domain 292 371 IPR013955 -
Tsu05g02775 493 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 366 - -
Tsu05g02775 493 SUPERFAMILY Nucleic acid-binding proteins 126 241 IPR012340 -
Tsu05g02775 493 SUPERFAMILY Nucleic acid-binding proteins 272 373 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02775 Tsu-Chr5 37882949 37885350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02775 27 353 Core DNA Replication Machinery Family AT2G06510 20.222 4.63e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02775 - - mtr:MTR_8g062030 379.022