Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02774 ATGACATCTAAGGATTTGCATGTTTTGAAGAAGCTTGAAGATTTTGTGGGAAGTGTGCCAGTGAAAAATTTAGCAGAGTTGCTTGATAGGCAGTTTAATGGTGAAGCTATTGCTGGTGTTTGGTTTGATTCAGTTGTTGAGGGTGTTGATATGTGGTTTCCTGATGATCATTCCAAGGACATACCAAagTTTATGATGAGGGTGAAGCATGGTGATAATGTAGCTGTATTTGCAGTTTTTGATAAAGATGTTCAAAAATTGGCTATTGAGACTTGTCCTCTTTTGTTATCCATGGGAGAGAGTTGTTCACTAtatccaaatgaaatgaaatgtttttaTGGTGATGCATATCTTTGTAGGATTGAAAAGAGGGATGATGCTGATTTTGATGATTTACCTTCTTTCAAGGTTGCATCTGTGTGCAATGAAGTTAATGTTGTTAATATGTTCTTTGATGAATATGTTCCTCATGTAGATCATCATGTCTGGATAAAGAATCTCGTGAAAGAAcaagttttttattattcttcGTGTGAGTCAAAGGAGGGTAGTAATTGTGGTGATGTTTCAGACCTTTGTAGCAAAATTGTTGGTGAAGAGGTGAGTTCTGGCACTGAGGCTGTTGCTGAAAGAGTTTGTTTGAGTCCTGATATGTGTTATTCCCGATATCAGTATGAGAAGAGGAGCAATGAGAATGTAAGGTTAACATATCCGGAGAAGTTTATATATGGTAGGAGGAAAAGTTGTGTTAAGAGAAAGTTTGAGTTTGATGATATTGTTGTTCATGGTGTAGCTGTTAAGAAGTCTGCTAAAAGTTCCAAGTCTGGTGTATTTATGTTTTGTGTAGGTTGGTTCTATTGCAGGCTTTTGTATCCAATGTTTCAGTCTCTCTTTGCTACTTCTTCGAGATTAATGGCGATAGAAGGAGAGGAGGgttttgatgatattatttCCATTAACCATTCAAGCACAGAAGGAAGATTCGAGATTAGAGTTGTGAGGAAATGGGGTGTTCTTGATTATTCAAGGCTAGGGGTGTTTGAATCGGTGGAGATGGTTTTAATGGACAAACATTCACACAAGATTCAAGCAAACATTCCCAATGATCTGCTATCTGTTTTTGATGCACAAGTTCAAGAGGGTAGAGTTTATGTAATATCAGATTTTACTGTGAGATTGAACGCTGGTCATTCTCTTTCAACTTATCATAGGTATGTGTTGTTCTTTAAtgagaatacaaatgtggtgcCATCTGATAATCACATGATTCCAACGTATGGGCTTTGTTTGATTGGAGCTGATAATGTGttagagaaaaaggaaaattttaAGTATTTAGTTGATGTTGTTGGTGTGGTCTCAACTGTTCAGCATGATAAGAACTTTTATTCTGATAGAAGGGTTACTAGATCTGTCACTTTTAGTCTAAATGATCAAAGGAAATCTTTTCTGTGTGAGCTTCCTGGTGAACTTGATGAAGAGTTTAAGGCTAAGATTAAATGTTGTACTGATGGCCCACCAATAGTGGTCTTGCAGTTTGCAAGAATTGTTATTTCTCAAGGTGCAGGTTCTGTCATGGTTGAAGGTGTTGAAAGAGTTACGAAGATACTTGTGAATCCAAATGTTGCTGAGGTGATAAATTTCAGGAATGGATTGCTATTATATCTTGGTAGAAGTCGAAATTATGGCGGACTTATTCGTGCAAAACAGCGGTTGCGTTTCTCTCATAATTTGGATTTTATCAATGATCATCCTGTGAAAAGCATTGCTGAATTAAACACCGATCCCCAACTTGGTGTTTTTATTGTCAATGCTAGTATGGTTGATATTGTTAGTCTTGATCCATGGTGGTTCCCCATGTGCAAGTGTGGTGAGGTCTTTGAGGACTATATTGGAGGTTTCCACCGTACTAAATGTAATTTGGTACAGTTTAAAGTAGTTCCAAAAGTGAAGCTAACTGTTGAATTGGAAGATGAATCTGGATGTGCTCGCATTAAGGTCTTTGATCATCTTATGGCTGATCTAGCTGTTATTGATCCAGATGCTCGAGTGACTACTGCTGATGATTTTAATAAGTCCTTTATTCAATTATGGGAAAAATTATAA 2106 0.3571 MTSKDLHVLKKLEDFVGSVPVKNLAELLDRQFNGEAIAGVWFDSVVEGVDMWFPDDHSKDIPKFMMRVKHGDNVAVFAVFDKDVQKLAIETCPLLLSMGESCSLYPNEMKCFYGDAYLCRIEKRDDADFDDLPSFKVASVCNEVNVVNMFFDEYVPHVDHHVWIKNLVKEQVFYYSSCESKEGSNCGDVSDLCSKIVGEEVSSGTEAVAERVCLSPDMCYSRYQYEKRSNENVRLTYPEKFIYGRRKSCVKRKFEFDDIVVHGVAVKKSAKSSKSGVFMFCVGWFYCRLLYPMFQSLFATSSRLMAIEGEEGFDDIISINHSSTEGRFEIRVVRKWGVLDYSRLGVFESVEMVLMDKHSHKIQANIPNDLLSVFDAQVQEGRVYVISDFTVRLNAGHSLSTYHRYVLFFNENTNVVPSDNHMIPTYGLCLIGADNVLEKKENFKYLVDVVGVVSTVQHDKNFYSDRRVTRSVTFSLNDQRKSFLCELPGELDEEFKAKIKCCTDGPPIVVLQFARIVISQGAGSVMVEGVERVTKILVNPNVAEVINFRNGLLLYLGRSRNYGGLIRAKQRLRFSHNLDFINDHPVKSIAELNTDPQLGVFIVNASMVDIVSLDPWWFPMCKCGEVFEDYIGGFHRTKCNLVQFKVVPKVKLTVELEDESGCARIKVFDHLMADLAVIDPDARVTTADDFNKSFIQLWEKL 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02774 701 Gene3D - 422 552 IPR012340 -
Tsu05g02774 701 SUPERFAMILY Nucleic acid-binding proteins 444 550 IPR012340 -
Tsu05g02774 701 SUPERFAMILY Nucleic acid-binding proteins 319 420 IPR012340 -
Tsu05g02774 701 CDD RPA1_DBD_A_like 330 415 - -
Tsu05g02774 701 Gene3D - 579 681 IPR012340 -
Tsu05g02774 701 Pfam Domain of unknown function DUF223 351 440 IPR003871 -
Tsu05g02774 701 Gene3D - 314 420 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02774 Tsu-Chr5 37867160 37872370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02774 316 691 Core DNA Replication Machinery Family AT5G08020 20.732 1.58e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02774 - - mtr:MTR_8g062060 175.252