Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02772 ATGTCGCACTTCGGAAGGCAAGGTCCTCCAGACATCGCTGACACCTACTCTCTCCTCGTCCTCAACATCACTTTCcGTACAACCGCTGATGACCTATTTCCTCTCTTTGATAAATACGGCAAAGTTGTTGATATTTTCATCCCCAAAGATCGAagGACTGGTGAATCGAGGGGTTTCGCTTTTGTGCGTTACAAGTATGCTGATGAAGCTTCAAAGGCTGTTGATAGACTCGAcggtatAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGAATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCACGATGATTACCGAGACAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTATGGACGTGATAGGTACCGTGGTGGGCGAGATAGGGACCATCGCCGCCGAAGCAGAAGCCGAAGTGCCAGTCCTGATTACAAGCGCCGTGGAAGGGGGCGCTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTAGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCAGGAAGGAGCCCTTCTCCTAAGAAGAGTATTTCTCCCCAAAGGAGTACTTCTCCCCAAAGGAGTACTTCTCCCAGGAAAAGTCCACGCCATGAAAGTCCTGATAATCTTAGCCGTGATGGAAGGTCTCCTACTCCTCGCAGTGTCTCACCACGAGGTCGCCCTGATGCATCCCGAAGCCCATCTCCTCGAAATTCAAACGGTGATGAATGA 828 0.4952 MSHFGRQGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGIMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRRHHDDYRDKDYRRRSRSRSYDRYGRDRYRGGRDRDHRRRSRSRSASPDYKRRGRGRYDDERHSRSRSRSVDSRSPARRSPSPGRSPSPKKSISPQRSTSPQRSTSPRKSPRHESPDNLSRDGRSPTPRSVSPRGRPDASRSPSPRNSNGDE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02772 275 MobiDBLite consensus disorder prediction 164 197 - -
Tsu05g02772 275 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 275 - -
Tsu05g02772 275 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Tsu05g02772 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Tsu05g02772 275 MobiDBLite consensus disorder prediction 198 229 - -
Tsu05g02772 275 Gene3D - 5 105 IPR012677 -
Tsu05g02772 275 MobiDBLite consensus disorder prediction 122 157 - -
Tsu05g02772 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Tsu05g02772 275 SMART rrm1_1 17 90 IPR000504 GO:0003723
Tsu05g02772 275 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 275 - -
Tsu05g02772 275 MobiDBLite consensus disorder prediction 102 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02772 Tsu-Chr5 37843595 37846540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02772 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.63e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02772 K12891 - gmx:100778928 310.071