Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02771 ATGCAGAGTGATTATTCTCTCCCACTGACTGCTCCTTATATTGTGCCTCGCCGGGGAAGGTGTGTCCGGCCATCGGCGCCGGAGAAGGAATCGAAACATTTTATGAAAGCTATACTTCCTTCACCCATTCATGCTAAAGAAATAAGACTTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCAGATGGTTGTGTATGGGAAATGGAATTGAAGAAATGTGACGAGAACGTtttcgtaataacttcCTGTGTAGATTTTAGAAATCTAGAAACCTCGTCAGCTTGGGTAATTGTTGGACTATGGCTAGGACTAGGAGTATCTTCAAACTTAGATGATTGCACAAAGAAGCATGCTGTTGAGAAATTACGATGGATTATTGGCAACATGgtgtaa 423 0.3924 MQSDYSLPLTAPYIVPRRGRCVRPSAPEKESKHFMKAILPSPIHAKEIRLPDEFITRFGNELKNVATITVPDGCVWEMELKKCDENVFVITSCVDFRNLETSSAWVIVGLWLGLGVSSNLDDCTKKHAVEKLRWIIGNMV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02771 140 Gene3D - 25 100 IPR015300 -
Tsu05g02771 140 PANTHER B3 DOMAIN-CONTAINING 28 90 - -
Tsu05g02771 140 SUPERFAMILY DNA-binding pseudobarrel domain 29 96 IPR015300 -
Tsu05g02771 140 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 28 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02771 Tsu-Chr5 37835598 37841818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02771 34 96 B3 DNA Binding Superfamily AT3G18990 38.095 3.07e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02771 - K11753 mtr:MTR_5g070440 127.487