Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02764 ATGAAGGCTCGCCGGGGAAGGTGTGTCCGGCCATCGGCTCCGGAGAAAGAATGGAAACATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCCAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTATAATTACTGTTCCAGATGGTCGTGTTTGGGAAATGGAAATGAAGAAATGCGGCGAACATGTTTTCTTTTGCAACAAATGGCAAGAGTTCGTAGAGTACTATTCTATAGGATATGGTTGCTATCTATCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCTGAGTACTAATGGAGAACAAAACCCGAAGTATTCTAGTCCTAGGAAACGGTCCAAGGTTGAAACAAGTGAGAGTCATGGGAAAAAGGTCAAAATAATGTCTAAAGATGCTTCTAAAAGAGCAGAGGATGCCGCCAATGAATTCAAACCAAAAAATCCATATTTTTGTTCCAAAATCGCTAAGGGAAAATGTGTGTATGTTATTTCTGATTTTGCTCTCAAGTATCTGAAGCTAAATGTTCCTATAAAACTCCAAAATTCTCATGGGGAGCATTGGGAAGTTTTTTGCCTAGTGCATAAGTCCAGATCATCAACAATGCGAATATCGAAAGGATTTTCTAAATTTCAACGGAACAACAACCTGTCACATGGAGATTATTGTGTGTTTGAACTGATCAAGAAGAAGCCTGTTGTGCTAAAAGTCACGATGTTTCGTGCGGTTGATTATCACGATTAA 825 0.3758 MKARRGRCVRPSAPEKEWKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVAIITVPDGRVWEMEMKKCGEHVFFCNKWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTLSTNGEQNPKYSSPRKRSKVETSESHGKKVKIMSKDASKRAEDAANEFKPKNPYFCSKIAKGKCVYVISDFALKYLKLNVPIKLQNSHGEHWEVFCLVHKSRSSTMRISKGFSKFQRNNNLSHGDYCVFELIKKKPVVLKVTMFRAVDYHD 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02764 274 CDD B3_DNA 180 268 IPR003340 GO:0003677
Tsu05g02764 274 SMART B3_2 21 113 IPR003340 GO:0003677
Tsu05g02764 274 SMART B3_2 178 270 IPR003340 GO:0003677
Tsu05g02764 274 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
Tsu05g02764 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 142 - -
Tsu05g02764 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 142 269 - -
Tsu05g02764 274 Pfam B3 DNA binding domain 185 269 IPR003340 GO:0003677
Tsu05g02764 274 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Tsu05g02764 274 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
Tsu05g02764 274 Gene3D - 155 273 IPR015300 -
Tsu05g02764 274 ProSiteProfiles B3 DNA-binding domain profile. 205 270 IPR003340 GO:0003677
Tsu05g02764 274 MobiDBLite consensus disorder prediction 128 150 - -
Tsu05g02764 274 PANTHER B3 DOMAIN-CONTAINING 142 269 - -
Tsu05g02764 274 CDD B3_DNA 19 111 IPR003340 GO:0003677
Tsu05g02764 274 PANTHER B3 DOMAIN-CONTAINING 16 142 - -
Tsu05g02764 274 Gene3D - 12 114 IPR015300 -
Tsu05g02764 274 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Tsu05g02764 274 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02764 Tsu-Chr5 37717958 37729851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02764 132 271 B3 DNA Binding Superfamily AT3G18990 37.671 2.26e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu05g02764 B3 4.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02764 - - mtr:MTR_5g070440 426.017