Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02763 ATGAAGGCTCGCCGGGGAAGGTGTGTCCGGCCATCGGCGGTGCCGGAGAAGGAATCGAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATGCCAAACAAATTAGAATTCCAGACGAATTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATCATTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGACGAACATGTTTTCTTTGGCAACAGATGGCAAGAGTTTGTCGAATACTATTCTATAGGATATGGTTGCTACTTGTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAAGTACTAATGAAGAACCAAACACAAAGTATCATAATCCTAGGAAAAGGTCCAAGGTTGAAACAAAGAAGTTCACCAGTGACTTGCGCGACAGCATCCACCACGGTTTTGGAATCGCTCTCAAACATGATATTTCACTTATTTTGCCTCCAACAATGGCAATGCTTTCACCTTCAATTACTGATTTGTAG 564 0.3954 MKARRGRCVRPSAVPEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIIVPDGCVWEMELKKCDEHVFFGNRWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTPSTNEEPNTKYHNPRKRSKVETKKFTSDLRDSIHHGFGIALKHDISLILPPTMAMLSPSITDL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02763 187 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Tsu05g02763 187 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 146 - -
Tsu05g02763 187 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Tsu05g02763 187 PANTHER B3 DOMAIN-CONTAINING 16 146 - -
Tsu05g02763 187 Gene3D - 13 115 IPR015300 -
Tsu05g02763 187 SUPERFAMILY DNA-binding pseudobarrel domain 18 113 IPR015300 -
Tsu05g02763 187 SMART B3_2 22 114 IPR003340 GO:0003677
Tsu05g02763 187 CDD B3_DNA 20 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02763 Tsu-Chr5 37705971 37709635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02763 22 120 B3 DNA Binding Superfamily AT3G18990 47.475 1.14e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu05g02763 B3 5.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02763 - - mtr:MTR_5g070440 240.35