Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02750 ATGAACCCATTAACACTAGTGAAACGGATTCagaaaatcaattcaagagaAGCTGCGCTAAACATCAGCGAAGAAGCTTCGTGGCATACTAAATACAAAGATTCTGCTTATGTTTTTGTTGGTGGTATTCCCTTTGATCTTACTGAGGGTGATTTGCTAGCTGTttttgctcaATGTGGGGAGGTTGTTGATGTTAATTTAGTTAGAGACAAAGGTACTGGAAAATCAAAGGGTTTTGCATTTATTGCATTTGAAGATCAAAGAAGCACTAATCTTGCTGTTGATAATCTGAATGGAGCTCAGGTTTTAGGTAGGATTATTAGGGTTGATCATGTTGATAAGTATAAGAAGAaggaagaggaagatgaagagaCAGAGCGGCAGAAAAGGGAGGCACGTGGTGTTTGTCGAGCTTTTCAAAGAGGGGAATGTACTCGTGGAGCTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACCGGTTGGGGTGAGAATGGCAATGCAAAATGGGATAATTACAAATATGATGGTcccaagaaagaaagaagatttgacaacaaccaatcaaatcgCATTCCAGAAACTAGAGACAGAGATTCACGCCCCAAAGTCCATGGCAATGAGATGGAATTAGACGACCAATCCAAGCGAAGTGATAGAACAGAGGAAAAGAAGTTGTTGAGGCATGATGacaatgataaatttgaggaaagagaaaatagcAGTAGAAGAGAAGCAAAGGGACCAAGAAGGCACAATGACGATGATTTTGAACATCGGTTTAGAGAAGATCGACAtaggagagaagaaaaaagatcAAGGGGTGGTTACGATTGTAGGGAATCTGAGCCAAGAGATGACAGAAGGGAAGACAAGAGGTCAACAAAGCGAGATGATGTCAAGTTTGAGTCCAAGTCAAGAGATTCTGATGTAAGAGATGATAAAAGACCAAATAGGCAGGATGTTGATGATTTTCGAAGCAAGTCAAGAGAACATGGTAACAGGGATGAGAGGAGATCAAGAAAGCACGTTGAAGACGAATCTGTGCCGAGGTCAAGAGAAGATCATGATAGGAAGCAAGATAACAGATCATATAGAAATGATACTGATCGATCTGAATCAAAAGGAAGATACGAATCTGAACGAAGAGAAGAAAAGAGGTCCGGAAGGTAA 1179 0.3622 MNPLTLVKRIQKINSREAALNISEEASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQCGEVVDVNLVRDKGTGKSKGFAFIAFEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGENGNAKWDNYKYDGPKKERRFDNNQSNRIPETRDRDSRPKVHGNEMELDDQSKRSDRTEEKKLLRHDDNDKFEERENSSRREAKGPRRHNDDDFEHRFREDRHRREEKRSRGGYDCRESEPRDDRREDKRSTKRDDVKFESKSRDSDVRDDKRPNRQDVDDFRSKSREHGNRDERRSRKHVEDESVPRSREDHDRKQDNRSYRNDTDRSESKGRYESERREEKRSGR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02750 392 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Tsu05g02750 392 MobiDBLite consensus disorder prediction 175 392 - -
Tsu05g02750 392 Gene3D - 8 127 IPR012677 -
Tsu05g02750 392 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Tsu05g02750 392 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Tsu05g02750 392 Coils Coil 115 135 - -
Tsu05g02750 392 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Tsu05g02750 392 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 303 - -
Tsu05g02750 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Tsu05g02750 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Tsu05g02750 392 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 303 - -
Tsu05g02750 392 Gene3D - 128 210 - -
Tsu05g02750 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Tsu05g02750 392 MobiDBLite consensus disorder prediction 160 392 - -
Tsu05g02750 392 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Tsu05g02750 392 SMART rrm1_1 37 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02750 Tsu-Chr5 37529579 37536374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02750 11 111 Eukaryotic Initiation Factors Gene Family AT4G34110 28.846 1.75e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02750 K13107 - gmx:100814734 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02750 05 37529579 37536374 Tsu05g02750 05 37529579 37536374 ECH