Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02739 ATGATTAGAGGAGAAAATTATGGTGTCAATAGCGTTAAAATCTTTGgcaatgaaaatataaattccATTGACCCTTTCATGGATAGATTCTTATGGGGCCAAATGACTCACTACCCTAACCATCAACAAAATAGTGCAAGTGTTTTTCCTTACTCTTATGGTTCAAACTATGAGTTTATGTGGCAAAATGCTCAAGATTCAATTAATGGGGTTTTAGCAAATGAAGAGGCTTTGGAGTGGACTAACTTCAACCAAAACCCTAGATTTTGCCTTAAGGATATTCATGGTTATGGTGAAAACACCAAAATATTGGGAAGGAAGGCTACGAAAGATACTTCTATGGTTTCGATCAAAGGACAATGGGCAAATGAAGAAGACAGGAAATTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGTCTAAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGAGATGGAATAATCACTTGCGTCCTAATATTAAGAAGGATAATTGGAgcgaagaagaagagaagataTTAGTAGCTATGCATGCAAAAATTGGAAACCGTTGGGCTGAGATCGCGAAGAAAATTCCTGGGAGAACGGAAAATACCATAAAAAATCATTGGAATGCTACAAAAAGAAGACAAAACTCAAGAAGAAAGAACAAGAAGAATGAAACTTCTAAAGGATCAAAACCAAAGTCCTCTATACTTGAAGACTATATTAAAAAGACCAACACATCCATCCCTACTAAAATTACCAACATACCCTCTTCATCTCATTCAAAACTCTCTCAAAACCTTGAAGAAAATCAATCAAACCTTTTGTTCAATGGATTACCCTCTGATTCTTTTTCCAatgaatatttgaatttttttcaaggcaatattgttgatgatgtgaatGAGAGTGGGCTTGTTAATTCAATCCATCAATACCCAAATTACAACATGCAATTCGATGAGACTACTCCTATGAACAATTTCTTCTCTTATGATCTTTACCTCTCTCAATTGTTGAACTTATAG 1035 0.3295 MIRGENYGVNSVKIFGNENINSIDPFMDRFLWGQMTHYPNHQQNSASVFPYSYGSNYEFMWQNAQDSINGVLANEEALEWTNFNQNPRFCLKDIHGYGENTKILGRKATKDTSMVSIKGQWANEEDRKLIRLVKQYGERKWSKIAEKLEGRVGKQCRERWNNHLRPNIKKDNWSEEEEKILVAMHAKIGNRWAEIAKKIPGRTENTIKNHWNATKRRQNSRRKNKKNETSKGSKPKSSILEDYIKKTNTSIPTKITNIPSSSHSKLSQNLEENQSNLLFNGLPSDSFSNEYLNFFQGNIVDDVNESGLVNSIHQYPNYNMQFDETTPMNNFFSYDLYLSQLLNL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02739 344 CDD SANT 121 164 IPR001005 -
Tsu05g02739 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 168 IPR017930 -
Tsu05g02739 344 PANTHER MYB PROTEIN-RELATED 5 343 - -
Tsu05g02739 344 ProSiteProfiles Myb-like domain profile. 118 164 IPR001005 -
Tsu05g02739 344 SMART sant 117 166 IPR001005 -
Tsu05g02739 344 SMART sant 169 217 IPR001005 -
Tsu05g02739 344 Pfam Myb-like DNA-binding domain 121 179 - -
Tsu05g02739 344 CDD SANT 172 215 IPR001005 -
Tsu05g02739 344 MobiDBLite consensus disorder prediction 201 240 - -
Tsu05g02739 344 ProSiteProfiles Myb-like domain profile. 165 215 IPR001005 -
Tsu05g02739 344 MobiDBLite consensus disorder prediction 214 229 - -
Tsu05g02739 344 PANTHER MYB TRANSCRIPTION FACTOR 5 343 - -
Tsu05g02739 344 SUPERFAMILY Homeodomain-like 117 211 IPR009057 -
Tsu05g02739 344 Gene3D - 117 169 - -
Tsu05g02739 344 Gene3D - 171 234 - -
Tsu05g02739 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 219 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02739 Tsu-Chr5 37420944 37423315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02739 102 343 MYB Transcription Factor Family AT5G58850 43.860 1.47e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g02739 Myb_DNA-bind_6 2.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02739 K09422 - aprc:113874412 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02739 05 37420944 37423315 Tsu05g02739 05 37420944 37423315 ECH