Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02729 ATGACTGAAGCCTTGCTAGGTGTTGTTTTTGAGAATTTGCTGTCTCTTATTCAAAATGAATTTGCAACCATTTCTGGAATCAAGTCAAAAGCTCAAAAGCTGTCAACTACCTTAGATCTCATCAATGTTGTTATTGAAGATGCCGAGCACAAACAGCTCACCAACCGTTCCATTAAGGTTTGGCTTCAACAACTCAAAGATGCAGTTTACGTGCTCGATGATATTCTTGATGAATATTCCATCGAATCTAGTCGACTTAAGGGAACATCCTCTTTCAATCCAAAGAACATCATGTTTCGCCGTGAGATCGGAAACAAGTTCAAAGAGATTACAAAGAGATTTGATCAAATTGCTGAAAATAAGAACAAGTTTCTCCTGCAAGTGGGTGGTACAGTTAGGGAAAGGTCCTCTGAAGTTGCTGAATGGCGCCTAACCACTTCGATTATTGCTGAGCCTAAAGTATATGGACGAGATGATGATAAAAAGAAGATTGTTGAGTTTCTTCTCACCCAAGCAAGAGGCTCTGAATTCCATTCTGTGTATCCTATTGTTGGCTTAGGCGGTATTGGAAAAACAACTCTTGCTCAATTGGTTTACAATGATCATCAGGTAAGTATAAACtttgatataaaattttggGTGTGTGTTTCTGAAGTTTTCTCTATCAAGAGGATTCTTTGTTCTGTTATAGAATCTATCACAAGAAAAAATCGTTATGCCTACGATTTAGATTTGATACAGAGAGAAGTGCAAGAACTATTGCAAGGTAAAAGATATTTGATGGTCTTGGATGATGTATGGAAAAGAAATGTGGAATTGGAATACGGATTAAGCCAGGACAATTGGAATAAGTTGAAATCTGTGTTGTCGTGTGGATCCAAAGGTTCTTCCATTTTAGTTTCCACTCGTGACAAGGATGTCGCAGAAATTATGGGAACATGCCAAGCTCATTATGTATCTGGTCTTTCTGAAGATGAATGTTGGTTGGTGTTCAAACAGTATGCATTTGGACATGAGAAAGAAGAGCGAGAAGAGTTTGTAGCAATAGGCAAGGAGATCATAAAGAAGTGTGGGGGACTGCCTCTTGCAGCACAAGCATTGGGAGGTCTAATGCGGTCAAGATCTCAAGTAAAGGAATGGCTTGAAATTAAAGACAGTGAGCTTTGGAATTTACCAGATGAAAATTCGATTTTACCTGCCTTGAGATTGAGCTACATATATTTAACACCGACCTTGAAGCAGTGCTTCACTTTTTGTGCTATATTTCCCAAAGATACAGAAATGATGAAAGAAGATTTAATTCACCTTTGGATGGCTAATGGATTTATTTCATCTAGGAAAAATTTGGAGGTAGAAGATGTTGGAAATATGGTTTGGAATGAATTGTGCCAAAAATCATTCTTCCAAGACATCAAGATGGATGGTGATTCAGAAGACATTTCTTTCAAGATGCATGATCTTGTCCATGATCTAGCCCAATTTGTTACTGGACCGGAGTGTATGATTTTGGAGAGCACAAACACAAATATTTCAAGAAGCACACACCATATTAGTTTTGACTATCCCACTTTGGTATCAATCAGTGAGGATGCCtatgaaaaaattgaatcatTGCGAACATTGTATTCACTAAAAGTGTTTGGCATCCACGAATTTTATAGTAGTTTTCCAAAGAACAATGCTCTACGTGTTTTACGCATAAATTGTTCAATGTTAGAGGATTCACTTGAGAGTTTCACTAATTTGCGGTATTTGGAGCTTTATGGTTTCTCAACCCTTGAATACATATCTCGTTCAATTCATACATTGCAGAAATTGGAagtcttaaaatttaaaagtttttggAAAACTACTAGATTACCAAACCAGTTGAGTTGCTTACAGAATCTCAGACACCTTGTCATCGAAGATTGTAACACAATGTCTTCTCTTTTTCCTAATGTGGGAAAATTATCTTGCCTAAAAACATTAAGTGTATTCATTGTTCGTCGGGAGACAGGCCACAGCTTGACAGAGTTACGTCATCTAAAGCTGGGAGGAAAACTTAGCATCAAAGGCCTAAAAAATGTTGGTAGCTTATCTGAAGCTCGAGAGgtaaatttgataaataaaaaagaccTCCAAGAACTATGCTTGTCATGGAGCAAAAGTGTAGTATTTACTGAGGGACCTACTATTAGTGCAGAGCAAGTAATTGAAGCACTTCAACCTCACTCAAATCTTAAGAGGTTGAAAATAGATCTCTATGATGGATTGTGCTTACCAAGTTGGATCAGTGTTCTGAGTAGTTTAATTTCTCTTGAACTTTCTGGTTGTGACAACTGTGTGCAGCTTTCAGCACTTGGTAGACTACcatctctaaaaaaaatctatttacgCCGGATGGATAATGTGCAGTacatggatgatgatgaacctcacCATGGTGTGGAGGGGAGGGCTTTCCCATCTCTAGAGGAACTCACATTAGATGGGTTACCAAACTTAGAGCGATTGTTGAAAGTGGAAAGTGTAGAGATGTTCCCCCATCTTTCTAATTTTACCATCATAAATTGCCCTAAACTTGTGTCGCCACACCTCTCATCTGTTAAATACCTATTTGTAGATGGATGTAACACCGAGTTACTGAGACAAATCTCTTGTTTTTATGGTCTTACAACTCTTCACCTTCATAAAAATGAAGATGTGACATCGCTCCCAGAGGGCATGTTAAGAAACCTGACCTTCCTTCAAACACTGACAATATCTGATTTCTTGAAATTGATGGAATTGCCAAATGAACCCTTCAATCTAGCTTTGGAACATCTGTGTATCAATCGTTGTGGTGAGCTTGAGTCTTTACCGGAGCAACTTTGGGAAGGTCCGCGTTCCCTTCAAACAATCGATATTGTTCAATGTGAAGGATTGAGATCCTTGCCAGAAGGTTTTCGACAACTCACTTCACTTCTGGTTTTGACTATTCATGGTTGCTCAACATTAAAGAAGCGATGCGAGGAGCAAACAGGGGAGGACTGGGATAAGATAGCGCACATTCCAAAATTACTGATTTGGTAG 3054 0.3733 MTEALLGVVFENLLSLIQNEFATISGIKSKAQKLSTTLDLINVVIEDAEHKQLTNRSIKVWLQQLKDAVYVLDDILDEYSIESSRLKGTSSFNPKNIMFRREIGNKFKEITKRFDQIAENKNKFLLQVGGTVRERSSEVAEWRLTTSIIAEPKVYGRDDDKKKIVEFLLTQARGSEFHSVYPIVGLGGIGKTTLAQLVYNDHQVSINFDIKFWVCVSEVFSIKRILCSVIESITRKNRYAYDLDLIQREVQELLQGKRYLMVLDDVWKRNVELEYGLSQDNWNKLKSVLSCGSKGSSILVSTRDKDVAEIMGTCQAHYVSGLSEDECWLVFKQYAFGHEKEEREEFVAIGKEIIKKCGGLPLAAQALGGLMRSRSQVKEWLEIKDSELWNLPDENSILPALRLSYIYLTPTLKQCFTFCAIFPKDTEMMKEDLIHLWMANGFISSRKNLEVEDVGNMVWNELCQKSFFQDIKMDGDSEDISFKMHDLVHDLAQFVTGPECMILESTNTNISRSTHHISFDYPTLVSISEDAYEKIESLRTLYSLKVFGIHEFYSSFPKNNALRVLRINCSMLEDSLESFTNLRYLELYGFSTLEYISRSIHTLQKLEVLKFKSFWKTTRLPNQLSCLQNLRHLVIEDCNTMSSLFPNVGKLSCLKTLSVFIVRRETGHSLTELRHLKLGGKLSIKGLKNVGSLSEAREVNLINKKDLQELCLSWSKSVVFTEGPTISAEQVIEALQPHSNLKRLKIDLYDGLCLPSWISVLSSLISLELSGCDNCVQLSALGRLPSLKKIYLRRMDNVQYMDDDEPHHGVEGRAFPSLEELTLDGLPNLERLLKVESVEMFPHLSNFTIINCPKLVSPHLSSVKYLFVDGCNTELLRQISCFYGLTTLHLHKNEDVTSLPEGMLRNLTFLQTLTISDFLKLMELPNEPFNLALEHLCINRCGELESLPEQLWEGPRSLQTIDIVQCEGLRSLPEGFRQLTSLLVLTIHGCSTLKKRCEEQTGEDWDKIAHIPKLLIW 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02729 1017 Gene3D - 137 317 IPR027417 -
Tsu05g02729 1017 PRINTS Disease resistance protein signature 180 195 - -
Tsu05g02729 1017 PRINTS Disease resistance protein signature 253 267 - -
Tsu05g02729 1017 PRINTS Disease resistance protein signature 357 371 - -
Tsu05g02729 1017 PRINTS Disease resistance protein signature 977 993 - -
Tsu05g02729 1017 PANTHER OS05G0414200 PROTEIN 29 947 - -
Tsu05g02729 1017 PANTHER DISEASE RESISTANCE PROTEIN RP 29 947 IPR044974 GO:0006952
Tsu05g02729 1017 SUPERFAMILY RNI-like 815 993 - -
Tsu05g02729 1017 Gene3D - 404 494 IPR036388 -
Tsu05g02729 1017 Gene3D Ribonuclease Inhibitor 516 662 IPR032675 -
Tsu05g02729 1017 Gene3D Ribonuclease Inhibitor 664 857 IPR032675 -
Tsu05g02729 1017 Gene3D Ribonuclease Inhibitor 858 1002 IPR032675 -
Tsu05g02729 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 419 IPR027417 -
Tsu05g02729 1017 SUPERFAMILY L domain-like 483 855 - -
Tsu05g02729 1017 Gene3D - 321 403 IPR042197 -
Tsu05g02729 1017 Pfam NB-ARC domain 158 385 IPR002182 GO:0043531
Tsu05g02729 1017 CDD RX-CC_like 3 119 IPR038005 -
Tsu05g02729 1017 Pfam Rx N-terminal domain 6 96 IPR041118 -
Tsu05g02729 1017 Gene3D - 6 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02729 Tsu-Chr5 37322718 37325771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02729 183 659 WRKY Transcription Factor Family AT5G45050 23.164 7.95e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02729 - - mtr:MTR_5g071220 1259.59