Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02726 ATGAAGTGGGAAATGGAAATTCTCCCTTCTGCATCATTCACACCAAATTCCAATTGGTGTATTGAAGATaacaatacaaaaacaaaatggacACCTGAAGAGAACAAGTTATTTGAAAATGCTCTTGCAGTTCATGATAAGGATACACCGGATCGATGGCATAGAGTGGCGGAAATGATACCTGGAAAGACGGTCGGTGATGTGATGAAACAGTATAAAGAATTAGAAGATGATGTTTGTAATATTGAAGCTGGATTGATTCCAGTTCCTGGTTATAATACTCCTACTTCACCTTTTACCTTAGATTGGGTTAATAGTTCTAGTTATGATGGATTCAAAGGAAGTGGAAAGAGATCTCCATTAGTTAGAGCAACTGAGCATGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACACAAATTGTTTCTACTAGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCATCACAAGAACACCAACTCAAGTAGCTAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATACATGACATAACAACAGTTAATCTCTCAGAAACTACAAGAACTTGTTCTTCAGAAGACACCAATAATAGATCCACTTCACCACAAAATTCCATGTTAGTCTCACACCAACAGCAACAACCAAGTTCTACTACTACAAATTTTCATTGGAGAAATAATCAACAAAATGCTATTGCTTTCAATCCAGCACATGAACAAGTTTTTATGGCTCCTCATGGTGTTAATTCCTATGAGACTAAAATGCAGgaccaaaattttcaaaaaggtcTTGTTAATGAGTCTTCTTATCCTCACAACATGGTTTTCCAAATGCAACATTCATCACAACATTATTCACATGCATAA 924 0.355 MKWEMEILPSASFTPNSNWCIEDNNTKTKWTPEENKLFENALAVHDKDTPDRWHRVAEMIPGKTVGDVMKQYKELEDDVCNIEAGLIPVPGYNTPTSPFTLDWVNSSSYDGFKGSGKRSPLVRATEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRTCSSEDTNNRSTSPQNSMLVSHQQQQPSSTTTNFHWRNNQQNAIAFNPAHEQVFMAPHGVNSYETKMQDQNFQKGLVNESSYPHNMVFQMQHSSQHYSHA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02726 307 Gene3D - 22 89 - -
Tsu05g02726 307 CDD SANT 29 75 IPR001005 -
Tsu05g02726 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 283 IPR043363 -
Tsu05g02726 307 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 283 - -
Tsu05g02726 307 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Tsu05g02726 307 MobiDBLite consensus disorder prediction 205 238 - -
Tsu05g02726 307 Pfam Myb-like DNA-binding domain 27 73 IPR001005 -
Tsu05g02726 307 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Tsu05g02726 307 CDD SANT 134 179 IPR001005 -
Tsu05g02726 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 130 182 IPR006447 GO:0003677
Tsu05g02726 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Tsu05g02726 307 SUPERFAMILY Homeodomain-like 129 182 IPR009057 -
Tsu05g02726 307 ProSiteProfiles Myb-like domain profile. 22 76 IPR001005 -
Tsu05g02726 307 Gene3D - 133 183 - -
Tsu05g02726 307 ProSiteProfiles SANT domain profile. 25 78 IPR017884 -
Tsu05g02726 307 SMART sant 26 78 IPR001005 -
Tsu05g02726 307 SMART sant 131 181 IPR001005 -
Tsu05g02726 307 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Tsu05g02726 307 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02726 Tsu-Chr5 37304420 37306836 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g02726 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02726 - - gmx:100784163 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02726 05 37304420 37306836 Tsu05g02726 05 37304420 37306836 ECH
Tsu05g02726 05 37304420 37306836 Tsu05g03285 05 44192234 44194056 ECH
Tsu05g02726 05 37304420 37306836 Tsu03g00929 03 8600108 8602068 ECH
Tsu04g01327 04 13455396 13458229 Tsu05g02726 05 37304420 37306836 ECH