Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02719 ATGAAGAAATCAGCAAGCACCAAATTGCAATATCAATCTagtcaaagaaaaaataatgcTTATTTTCAAGATAGTAAAGAAATTGATTCCACAAAGAAGCACAATTCAGCACTGAAAAGTTTCAAATCTGCTTTCAGAAAATTTGCTTTGATTTTCATTGGTAAAAGAAAAACTTCTTCAGAACTTATTGGAAGTGGTGACAGAAAAAATACATCAAAACCAAGATTGGTGGTATCATcttcaactgaTTTATCATCTGGAAGTACCAACAAGAACTCATCAAACTGGAAATTTTCTTATTCCTATGCATCATCTAGTACTACAAGTGAGCAGCTTGGAGTTGGGAATTTCACTTTTGATGAAATTTACAAGTCAACTGCAAAATTCTCTCCAGATAATCAGATTGGAGAAGGTGGTTTTGGAACTGTCTATAGAGGAAAGCTTAATGATGGAACTATCGTTGCTGTGAAGCGTGCAAAGAAGGAAGCACTGCAGAGTCACCTATATGAGTTCAAGAACGAAATATACACTTTATCGAAAATTGAGCACCTGAATCTTGTGAGGTTATACGGATATTTGGAGCACGGAGATGAGAAACTTATTGTTGTTGAGTATGTTGCTAATGGGAATCTTAGAGAACATTTAGACGGCATACGAGGAAATGGACTAGAAATCGGTGAACGTCTAGACATAGCAATCGATGTGGCTCACGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATACATAGAGACATCAAAGCATCAAACATCTTAATTAGTGATAATCTAAGGGCTAAAGTGGCAGACTTTGGTTTTGCAAGGTTGTCTGAAGACCCTGGTGCAACTCATATTTCAACGCAAGTTAAAGGAACAGCCGGATATATGGATCCTGAGTATTTGAGAACTTATCAGCTTACAGAAAAAAGTGATGTTTATTCCTTTGGTGTATTGCTTGTTGAAATGATGACAGGAAGACATCCGATTGAAcctaagaaaaaaattgatgagaGAGTTACAATCAGATGGgCAATGAAGACGCTAAAGAAAGGAGAAGCTGTGTTTGCCATGGATCCAAGACTTCGAAGAAGTCCTGCCTCCATCAAGGCAATGCAGAAGGTTTTCAAGCTAGCTTTTGAATGCCTTGTGCCTTCCATACATTTGAGACCACCTATGAAGAAATGTGCAGAGGTTCTATGGGCCATCCGTAAAGATTTTAAAGATGAAAGCACTCCTCTTCCTACCTTACCTTCTCATCAATCTGAAAATTTTCCTCAAAGAGAAAGGAATAAGCATATGTTAGGTATTGAAGATGAAGACAGCTACAAATTTACGTCTGCACCTAATCATATTCATTCGtga 1368 0.3589 MKKSASTKLQYQSSQRKNNAYFQDSKEIDSTKKHNSALKSFKSAFRKFALIFIGKRKTSSELIGSGDRKNTSKPRLVVSSSTDLSSGSTNKNSSNWKFSYSYASSSTTSEQLGVGNFTFDEIYKSTAKFSPDNQIGEGGFGTVYRGKLNDGTIVAVKRAKKEALQSHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGDEKLIVVEYVANGNLREHLDGIRGNGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILISDNLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPKKKIDERVTIRWAMKTLKKGEAVFAMDPRLRRSPASIKAMQKVFKLAFECLVPSIHLRPPMKKCAEVLWAIRKDFKDESTPLPTLPSHQSENFPQRERNKHMLGIEDEDSYKFTSAPNHIHS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02719 455 Gene3D Transferase(Phosphotransferase) domain 1 206 415 - -
Tsu05g02719 455 MobiDBLite consensus disorder prediction 64 91 - -
Tsu05g02719 455 SMART serkin_6 129 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02719 455 ProSiteProfiles Protein kinase domain profile. 129 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02719 455 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 25 430 - -
Tsu05g02719 455 Pfam Protein tyrosine and serine/threonine kinase 132 400 IPR001245 GO:0004672|GO:0006468
Tsu05g02719 455 Gene3D Phosphorylase Kinase; domain 1 89 205 - -
Tsu05g02719 455 MobiDBLite consensus disorder prediction 62 91 - -
Tsu05g02719 455 CDD STKc_IRAK 135 401 - -
Tsu05g02719 455 SUPERFAMILY Protein kinase-like (PK-like) 107 405 IPR011009 -
Tsu05g02719 455 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
Tsu05g02719 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Tsu05g02719 455 MobiDBLite consensus disorder prediction 1 26 - -
Tsu05g02719 455 MobiDBLite consensus disorder prediction 1 21 - -
Tsu05g02719 455 PANTHER RECEPTOR-LIKE PROTEIN 55 25 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02719 Tsu-Chr5 37217645 37221384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02719 101 396 Receptor kinase-like Gene Family AT1G79620 42.574 1.06e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Tsu05g02719 PK_Tyr_Ser-Thr 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02719 - - lja:Lj2g3v2222900.1 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02719 05 37217645 37221384 Tsu05g02719 05 37217645 37221384 ECH
Tsu05g02719 05 37217645 37221384 Tsu03g01440 03 14005092 14008692 PCT