Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02707 ATGAAAACCATTCTCTCGTCCGAAACAATGGACATTCCAGAAGGTGTAAGCATCAAAGTACACGCCAAACTCATCGAAGTTGAAGGTCCACGTGGCAAACTCGTTCGTGATTTCAAGCATTTGAATCTTGATTTTCAACTCATTACTGATGAAGAAgggaaaaagaaattgaaagttGAAGCTTGGTTTGGATCAAGGAAAACTTCTGCTGCTATTCGTACTGCTCTTAGTCATGTTGATAATCTCATTACTGGTGTTACTAAGGGTTATCGTTACAAGATGCGATTTGTTTATGCTCATTTTCCCATTAATGCTAGCATCACTAATAGTAACTCTGCTATTGAGATTCGTAATTTCCTTGGTGAAAAGAAgGTGAGGAAAGTCGACATGCTTCAAGGTGTTACTGTCCTTCGATCTGAAAAGGTGAAGGATGAGTTGATTTTGGATGGAAATGACATTGAGCTTGTTTCCAGATCTTGTGCCCTCATTAACCAGAAATGCCATGTTAAGAACAAAGATATCCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAGGGGGACCATAGCTGAGGAATAG 579 0.3851 MKTILSSETMDIPEGVSIKVHAKLIEVEGPRGKLVRDFKHLNLDFQLITDEEGKKKLKVEAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASITNSNSAIEIRNFLGEKKVRKVDMLQGVTVLRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSERGTIAEE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02707 192 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 1 192 - -
Tsu05g02707 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 192 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu05g02707 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02707 Tsu-Chr5 37125889 37128187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02707 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 83.420 8.60e-120 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02707 K02940 - ini:109175062 353.599