Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02700 atGAACTTTTCTTGTGCCATAACAAAACCCAATTTTCCATTTACCCAAACAGAAATGCCAATTCTAACATTTGGTCATTCTAAGTTAAGTGCTACCCTAGCTCTTCAATTTCCATGTAGTTGTGTTAAGAAGATAAGGTTGATTACAAAACTTCAGTGTTCTGTTGCTGATAGGACATATACTTCTAGGACAGGTGATTCGCGGGAACCCAAACGGGACTCTGGCGAAATTCAAAGGAGGAAGAAAGGACCCTCGTCGTCATATATTGCTTACATTCGTCCTAGTTTATCTGATATGAAGAAAGATAAGGTTGCGTTGCGTGAAAATGTTTATGAGTTCTTGCGAGCAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTTACCGTTGATGTTATGAAGGAGCGGGTTGATTTTCTTCACAGCTTGGGGCTTACAATTgaagatattaataattatcCTCTTGTTCTTGGTTGTAGCGTCAAGAAGAATATGGTTCCTGTGCTAGACTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACACAGTTTTTGCAAAGATACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTGTACCGGTGGTCAAGTATCTTCAAGGGATGGATATCAAGCTCATTGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGCTGGGATTCAAACTTGAGGGTACCATGAGCACATCAGTTGCTTATTTGGTTGGAATCGGTGTTGATAGAAGAGAACTCGGAGGTGTCTTAACTAGATACCCGGAGATTTTGGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTGGAGTATTTGGAAAGCTTGGGTATTCCAAGGCTAGCCATTGCTAGACTGATAGAGAAACAACCTTATATTCTTGGATTCGATCTGGACGAGAGGGTGAAGCCAAATGTCAAATCCCTTGAAGAGTTTAATGTTAGGAAAACGTCACTTGCATCTATAATTGCTCAGTATCCTGAAATCATTGGAACTGACCTAGAGCCGAAGCTTGCAAATAAGAGAAATGTGCTCAATTCTGTGCTTGATTTGGATCCTGAGGATTTCGGCTTAATTGTTGAGAAGATGCCACAGGTAGTTAGCCTTAATAGTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGCAGATTTTCTGTGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTTGATTACTTCCAAAGTGCGATGGAAAGGCCTTTGGAAGACTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACAATAAAACCTAGGAATAACATGGTTACCAAGAAAGGATTGAAGTGTTCTCTTGCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGATACTATTGACATGGAAGAGATGGAAATGGAACCGTCATTTGACATGAATTCATTGATGCGACCAAGGAATGATGAATCAGATTCTGATTACGAAGACagtgattatgatgatgatgatgatgaataa 1584 0.3927 MNFSCAITKPNFPFTQTEMPILTFGHSKLSATLALQFPCSCVKKIRLITKLQCSVADRTYTSRTGDSREPKRDSGEIQRRKKGPSSSYIAYIRPSLSDMKKDKVALRENVYEFLRAIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLQRYPQVLHASVVVDLVPVVKYLQGMDIKLIDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVDRRELGGVLTRYPEILGMRVGRIIKPFVEYLESLGIPRLAIARLIEKQPYILGFDLDERVKPNVKSLEEFNVRKTSLASIIAQYPEIIGTDLEPKLANKRNVLNSVLDLDPEDFGLIVEKMPQVVSLNSTPMLKHVDFLKDCRFSVDQMRKMIVGCPQLLALNIDIMKLSFDYFQSAMERPLEDLVEFPAFFTYGLESTIKPRNNMVTKKGLKCSLAWMLNCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLMRPRNDESDSDYEDSDYDDDDDE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02700 527 Gene3D Transcription termination factor 3, mitochondrial 277 489 IPR038538 -
Tsu05g02700 527 Gene3D Transcription termination factor 3, mitochondrial 138 276 IPR038538 -
Tsu05g02700 527 PANTHER CGI-12 PROTEIN-RELATED 31 513 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 MobiDBLite consensus disorder prediction 496 527 - -
Tsu05g02700 527 SMART mt_12 330 362 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 MobiDBLite consensus disorder prediction 59 85 - -
Tsu05g02700 527 MobiDBLite consensus disorder prediction 62 80 - -
Tsu05g02700 527 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Tsu05g02700 527 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 31 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02700 Tsu-Chr5 37018933 37021359 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu05g02700 mTERF 1.6e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02700 K15032 - gmx:100785223 798.89