Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02698 ATGGGTTCTTTATGTGATTTTTGCGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGATGCTGCTTCCTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAACACACTTTCTAAGCGTCATTCAAGAACACTTGTATGTGAGAGGTGTAATTCACAACCTGCCTATGTGAGGTGTGTTGAAGAGAAAGTTTCCCTTTGTCAGAACTGTGATTGGTCAACTCATGGTACCGATCCATCTTCTTCAACTCACAAGAGACAATCAATCAATTGCTACTCTGGCTGTCCTTCAGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCAGACATCTCTTCTATGGGCGAAGCATGTGAGCAGGAACTCGGTTTGATGAGCATTAATGAGAACAATGACAATAAACCTCTGCTTCCTCCAGAAAGCAAGAATGTGTCTGGTTCTACTCAATTCGCCGATCTTCCCAGCAAGGATAAGTCGAGGGCCGGCACATCTTCAATACCCGAGTCAAGTGCAAAACCTCATATTATTGACCAGGCACCTGGACCTTCCAATGAATGTATGCCTAAGTTACAATGTTCCAGTAGAAAGGCTCCTGCACTCTGCAAAGATGATAATTTGTATGATGATTTCAACATAGATGATATGGATCTCGAACTTGAGAACTATAAGGAAATATTTGCTTTTGCTCTCAATCACTCAGAAGAGTTTTTTGAAAAGGGCAGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGATGTTGCTGCTGAGGGGCCATCAGCTCGGTTTGTCAGTTCTATCCAACCAGCATACAGCAATGCAGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCAGTTCTTTATTTTACGGAACAGCAATCCGaatcaaacatttcattttctaGCGCTACAAAAGATGCTAGTGCTGGTGACAATCTAGAGTGTGGTGCATCCTCAATGCTTCACATGGGGGAGCCTCCCTGGTGTCCTCCTTGCCCTGTGACTTCTATTCAATCTGCTAATCGCAGCAACGCTGTCATGCGTtataaggaaaagaaaaagaatcggaaGTTTGATAAGAAAGTAAGGTATGCTTCTCGGAAGGCTAGAGCTGATGTCAGAAAACGTGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACGTTCGACTATGACCCTTTGAGCGAAACCAGAAGCTGCTGA 1215 0.423 MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANTLSKRHSRTLVCERCNSQPAYVRCVEEKVSLCQNCDWSTHGTDPSSSTHKRQSINCYSGCPSASELSSIWPFFSDISSMGEACEQELGLMSINENNDNKPLLPPESKNVSGSTQFADLPSKDKSRAGTSSIPESSAKPHIIDQAPGPSNECMPKLQCSSRKAPALCKDDNLYDDFNIDDMDLELENYKEIFAFALNHSEEFFEKGSIDSLFERKDMSASDVAAEGPSARFVSSIQPAYSNAASADSILSTKTEPVLYFTEQQSESNISFSSATKDASAGDNLECGASSMLHMGEPPWCPPCPVTSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETFDYDPLSETRSC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02698 404 CDD Bbox1_BBX-like 4 47 - -
Tsu05g02698 404 Pfam CCT motif 347 389 IPR010402 GO:0005515
Tsu05g02698 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 403 - -
Tsu05g02698 404 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Tsu05g02698 404 MobiDBLite consensus disorder prediction 130 172 - -
Tsu05g02698 404 SMART bboxneu5 1 47 IPR000315 GO:0008270
Tsu05g02698 404 SMART bboxneu5 48 90 IPR000315 GO:0008270
Tsu05g02698 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 403 - -
Tsu05g02698 404 CDD Bbox1_BBX-like 47 90 - -
Tsu05g02698 404 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu05g02698 404 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Tsu05g02698 404 MobiDBLite consensus disorder prediction 130 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02698 Tsu-Chr5 36952461 36957751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02698 1 403 C2C2-CO-like Transcription Factor Family AT3G07650 53.606 1.10e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu05g02698 zf-B_box 4.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02698 - - gmx:100783016 607.06