Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02695 atggcTGAGGGAGAGAGGGTGGTGGAACCAGAACCAGAACAAGAAAACGAACAAGAATCAGAACCagaaacaacaataacaacaacaatgttGAAACACAACCAGACAATGCAGTTAATATCAGAAAAACTAACAAATGGAAACCTTAACTCAAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGGTtcgaaaatcaacaaaaacacgCTCCAAACTTGCTGATACTGGTGTCATTCAACCTCTTATCTTCATGCTTTCTTCTTCCAACTTTGATGCTCGTCATTCCTCTCTTCTTGCTCTCCTTAACCTCGCTGTTCGCAATGAAAGAAACAAGGTCCAAATAGTGACAGCTGGTGCAATGCCTCCTCTGGTGGAGCTTCTCAAGATACAAAATAACGGTGTACGAGAATTGGCTACAGCTGCAGTCTTGACACTTTCATCTGCTGCAACCAACCAGCCGATTATTGCTTCTTCTGGAGCTGCTCCTCTCCTGGTTCAGATTCTCAAATCTGGAAGCGTTCAAGGCAAAGTTGATGCTGTCACAACCCTCCATAATCTCTCCACTGGCACTGAGAACTCCATTGAACTTCTTGATGCTAGTGCTGTTTCCCCTCTTATCAACCTCCTTAAAGACTGTAAGAAGTATTCCAAGTTTGCAGAAAAAGCTACATCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAATCGCAATCTCACTGGCAGACGGTGGAATTTTGACTCTAGTAGAGACAGTTGAAGACGGATCACTTATCAGCACAGAGCATGCTGTTGGAGCATTGCTATCATTATGTCAAAGCTGTCGGGATAAATATCGGGAACTAATTCTTAATGAAGGAGCAATTCCGGGTCTGTTACGGCTGACAGTAGAGGGCACAACTGATGCTCAAGATAGAGCTCGCACGCTTCTGGATTTGCTCAGAGATTCTCCTCAAGAGAAAAAACTAGACTCCTCGGTTTTGGAAAAAATTGTTTTCGACATTGCTGAGCGGCTAGATAGAGTAGATAAAACTGCTGAAACTTCGAAATGA 1056 0.4129 MAEGERVVEPEPEQENEQESEPETTITTTMLKHNQTMQLISEKLTNGNLNSKIEAAREIRRMVRKSTKTRSKLADTGVIQPLIFMLSSSNFDARHSSLLALLNLAVRNERNKVQIVTAGAMPPLVELLKIQNNGVRELATAAVLTLSSAATNQPIIASSGAAPLLVQILKSGSVQGKVDAVTTLHNLSTGTENSIELLDASAVSPLINLLKDCKKYSKFAEKATSLLEILSNSEEGRIAISLADGGILTLVETVEDGSLISTEHAVGALLSLCQSCRDKYRELILNEGAIPGLLRLTVEGTTDAQDRARTLLDLLRDSPQEKKLDSSVLEKIVFDIAERLDRVDKTAETSK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02695 351 MobiDBLite consensus disorder prediction 1 24 - -
Tsu05g02695 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 77 119 IPR000225 GO:0005515
Tsu05g02695 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 201 245 IPR000225 GO:0005515
Tsu05g02695 351 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 17 341 - -
Tsu05g02695 351 PANTHER U BOX DOMAIN-CONTAINING 17 341 - -
Tsu05g02695 351 SUPERFAMILY ARM repeat 34 324 IPR016024 -
Tsu05g02695 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 119 161 IPR000225 GO:0005515
Tsu05g02695 351 SMART arm_5 233 274 IPR000225 GO:0005515
Tsu05g02695 351 SMART arm_5 107 148 IPR000225 GO:0005515
Tsu05g02695 351 SMART arm_5 66 106 IPR000225 GO:0005515
Tsu05g02695 351 SMART arm_5 190 232 IPR000225 GO:0005515
Tsu05g02695 351 SMART arm_5 149 189 IPR000225 GO:0005515
Tsu05g02695 351 Pfam Armadillo/beta-catenin-like repeat 108 146 IPR000225 GO:0005515
Tsu05g02695 351 Gene3D - 17 345 IPR011989 -
Tsu05g02695 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02695 Tsu-Chr5 36915070 36920052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02695 25 317 U-box Gene Family AT3G54790 37.755 2.25e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02695 K08332 - gmx:100782472 493.041