Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02690 ATGGGTGCCGTCGGCGAGTGTTTACCTCCGCCGCACGCGGAGGAGCTAGCGGTGCTGTCTCTTAACAAGCTGCCGTTAGGTTTTCGGTTTCGTCCTACTGATGAAGAAGTCATCGATTACTATCTTCGACAGAAGATCAATGGAAACGGTGATGAAGTTTGGGTTATTCGTGAAGTTGATGTTTGTAAATGGGAGCCTTGGGATTTACCTGattTGTCGGTGGTAAGAAACAAGGATCCAGAGTGGTTCTTTTTCTGTCCGCAGGATCGGAAGTATCCAAATGGAAGTAGGTTGAACCGAGCAACAACTCATGGGTATTGGAAGGCAACAGGCAAGGATCGGAGGATTAAGTCTGGCTCTACTTTGATTGGAATGAAGAAGACTCTTGTTTTCTACTCTGGTCGTGCTCCGAAAGGGAAGAGGACCAATTGGGTTATGCACGAGTATAGGCCTACCTTGAAGGAGCTCGATGGTACCAACCCTGGACAGAACCCATATGTCATTTGTCGCTTGTTTAAGAAGCTAGATGAGAGTCTCGAAAGTTCAAACTGTGGTGAAGTGGAGCAGACTACTTCAAATCCCGCGTCTGCAGATTATTCTCCAGAAGATATACAGTCTGATCTAAATATGGTTCCTATATCTTCCTCACCAGCCACAGAAGATGATAGGCACCTAGCAGCTATCCCTGAGAATTCTGAGGAGGCAATATCCAACGTTATAACCCCAGCTGATTGCTATAGCGATGCATGTGATGCTTCTGATGCACAATATCAAATTGTAGAAGTACCAGCTGCAGAGGATGATCAACCGTTGAATTTTGACATATTTGATGACCCACAATTTGAGCCATTTGATGATAAACTATTCTCCCCGGTCCACGCACATTTTCCACGAGAGTTTAATTATCAAGCCAACAACGAATTCGAATTTCAGTATGGTACAAATGAAATAGATGTTTCAGACTTTTTCAACTCGGCTGTTAATTGGGACGAGTGCTCCTATGAGGCGTCTAGCTCATGCTTCCTTAGTCGTAAGGACAACGGTTCGTGCAGTGACTCAGATGCGGAAATGGCCAAAATGACGATGCATCTGCAAGCAGATTCGGGAAATAGTGATGTAGGATTGTTCCAGAACAACTCCCAGATTCCTTTTTCAACTGATTTTAATATCGGCCAAACACCTGCTGTGGTCAATGAGTATGAGCATCCAACGACTATGACAGCACGAGGTGTCACTGAAATCATGGCAAGGACTGAACAAGGGCAGAGTGAACAGCCAAACATGAACCCAGTGATGCAAGCACGAGGTAGTGCACCGAGAAGAATACGGTTGGAAGGATTTGTTACACATTCCCTTGCTTCTGAGGAGACGACAAAAGATGAATGTTATGCAGCTGGATATGAGCAATCAAGGGATAATGTTGTCCACAGTGGCACTGGAATCAGGGTAAGGACTCGACAAGTAAGAAACGAACAGCCAAACATGAACCCAGTGATGCAAGCACAAGGTAGTGCACCGAGAAGAATACGGTTGGGAGGATTTGTTACACATTCCATTTCCGAGGAGACAACAAAAGATGAGAGTTCTGCACCAGAAAACCCTAACGCAGAAACCCTAATTCCCACAGTATTTTGCAGCAGGGTCCGTTACACATCAAAGAGACCCTCCAATCGTTCCATGTGGTTTTCTGTTCTTGCAGTTTCTGCCACTGTACTGCTCTCACTTGTATTGCTTGTTAATATTTGGGGATATACTTAG 1758 0.4499 MGAVGECLPPPHAEELAVLSLNKLPLGFRFRPTDEEVIDYYLRQKINGNGDEVWVIREVDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGSRLNRATTHGYWKATGKDRRIKSGSTLIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKLDESLESSNCGEVEQTTSNPASADYSPEDIQSDLNMVPISSSPATEDDRHLAAIPENSEEAISNVITPADCYSDACDASDAQYQIVEVPAAEDDQPLNFDIFDDPQFEPFDDKLFSPVHAHFPREFNYQANNEFEFQYGTNEIDVSDFFNSAVNWDECSYEASSSCFLSRKDNGSCSDSDAEMAKMTMHLQADSGNSDVGLFQNNSQIPFSTDFNIGQTPAVVNEYEHPTTMTARGVTEIMARTEQGQSEQPNMNPVMQARGSAPRRIRLEGFVTHSLASEETTKDECYAAGYEQSRDNVVHSGTGIRVRTRQVRNEQPNMNPVMQAQGSAPRRIRLGGFVTHSISEETTKDESSAPENPNAETLIPTVFCSRVRYTSKRPSNRSMWFSVLAVSATVLLSLVLLVNIWGYT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02690 585 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 19 490 - -
Tsu05g02690 585 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Tsu05g02690 585 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Tsu05g02690 585 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 19 490 - -
Tsu05g02690 585 MobiDBLite consensus disorder prediction 183 202 - -
Tsu05g02690 585 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
Tsu05g02690 585 Gene3D NAC domain 33 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02690 Tsu-Chr5 36828682 36832313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02690 16 492 NAC Transcription Factor Family AT4G35580 39.962 9.41e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g02690 NAM 8.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02690 - - mtr:MTR_5g069030 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02690 05 36828682 36832313 Tsu07g01504 07 13619107 13624335 PCT