Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02683 ATGCCAAGCACATCACATGTTATTACATGCAAAGCTGCAATATGTTTGGGGGCAGGAAAACCAGTGACAGTGGAAGAGATACAAGTAGATCCACCAAAGGAAACAGAAGTTAGAGTTAAGATGCTGTGTGCTAGTCTTTGTCACACAGACATCTCAAGCATTCAAGGATTTCCACATAATAAATTCCCCCTAGCACTTGGACATGAAGGAGTTGGTGTTATAGAGAGTGTTGGTGATGAAGTAACAAATCTGAAAGAAGGAGATATTATAATCCCAACATATGTAGGGGAATGTCAAGAATGTGAGAATTGTGTTTCAGGGAAAACAAATCTTTGTCTTACATACCCTGTGAGATTCACTGGACTAATGCCTGATAATACTTCAAGGTTGTCCATTCAAGGCCAGAGACTATATCATGTTTTGAGTTGTGCGACATGGTCAGAATATGTGGTTGTTGATGTCAACTACCTTCTCAAAGTTGATCCATCCATTAATCTAGCTTATGCTAGTTTCATCTCATGTGGGTTTGCAACTGGTTATGGAGCTGCTTGGAAGGAAGCTAAGGTTAAAACTGGTTCAAGTGTTGCTGTTTTTGGTCTTGGAGCTGTTGGTTTAGGgGCTATAAGTGGAGCCAAAATGATGGGAGCAAGTAAGATAATTGGGGTTGACAAAAATgaaatgaagagagaaaaagcAAAGGCTTTTGGACTAACACACTTTATAAATCCAAGTGATTCTAATAAATCTGCTTCAGAACTAGTCAAAGAATTGAGTGGTGGAATGGGTGTGGATTATTCTTTTGAGTGCACTGGAGTTCCTTCTTTACTTAATGTATCAGTTGAAGTCACAAAATTAGGAACAGGTAAAACAATAGCTATTGGTTCAGGAGTTGAAAATATAGTACCATTAGATCTTATTGCCATTATATTTGGTAGAACATTGAAAGGTTCTGTTTTTGGAGGACTGAAAACCATATCAGACCTTTCCATCATAGCTGACAAATCTCAAAAAGAGgAATTCCCTCTTCAAGAACTGTTCACCCATGAGGTACCATTGATAGATATAAACAATGCATTTGAGTTATTGAAGAACCCTAATTGTATCAAAGTTGTCATCAAGATGATGTGA 1128 0.3715 MPSTSHVITCKAAICLGAGKPVTVEEIQVDPPKETEVRVKMLCASLCHTDISSIQGFPHNKFPLALGHEGVGVIESVGDEVTNLKEGDIIIPTYVGECQECENCVSGKTNLCLTYPVRFTGLMPDNTSRLSIQGQRLYHVLSCATWSEYVVVDVNYLLKVDPSINLAYASFISCGFATGYGAAWKEAKVKTGSSVAVFGLGAVGLGAISGAKMMGASKIIGVDKNEMKREKAKAFGLTHFINPSDSNKSASELVKELSGGMGVDYSFECTGVPSLLNVSVEVTKLGTGKTIAIGSGVENIVPLDLIAIIFGRTLKGSVFGGLKTISDLSIIADKSQKEEFPLQELFTHEVPLIDINNAFELLKNPNCIKVVIKMM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02683 375 Gene3D - 179 317 - -
Tsu05g02683 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Tsu05g02683 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 333 IPR036291 -
Tsu05g02683 375 Pfam Zinc-binding dehydrogenase 202 323 IPR013149 -
Tsu05g02683 375 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Tsu05g02683 375 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Tsu05g02683 375 SUPERFAMILY GroES-like 4 191 IPR011032 -
Tsu05g02683 375 Gene3D - 16 369 - -
Tsu05g02683 375 CDD liver_alcohol_DH_like 8 373 - -
Tsu05g02683 375 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Tsu05g02683 375 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02683 Tsu-Chr5 36745837 36748940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02683 34 362 Monolignol Biosynthesis Gene Families AT2G21730 26.239 2.42e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02683 K00121 - gmx:100798341 621.698