Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02663 ATGGAAACTTTGGATGGTAATTCAGAACAATATGCTAATGTTTCTTCTAATTCACCATCGTTgtcatcatcgtcatcatctTCGTCGTTTGGAGGGGTTAATGGTGATGATAATAATGGTAGTGTAACTTGGTATGGAATGAGGTTACCTTCTGTTAATCCATTTTTGTCACCGCTTTCGTTTTTATTGGATTATTCTGGAATTCTAAGATCAAACAATGATTCTGAGGCTATGATTGTGAATAATGGAGTTTCTGGTTCGGAAATACGGTCTCGGGTTGATTCTGCTGCTGCTGTTGGTGAGAGCAGTGCAGGGGAAGTTGCAATTAGGATTATTGGAGCTGGAGAGCATATTCAGAATCAGGTTGGGGAAGTGGGTTATGATGATTGTGGTGAGGATCTGGTTGGTGAGAGAAGTGGAATTCCTGCATTGGATGATGGTGATGCCGAGGGACGTGGTGGAATTGAGGCTAGTGAGGGGGTTCCTCTTGTGTCTTCGGCTTCATCGTCGTCGTTGGCTGGTAGTGGACAGGTTGATGGTGATCCTTCTGGGAATGGAACAGAAAATAACAGCAGGGATTCGTCTTCTTATCAGAGATATGATATTCAGCTGGTTGCTAAGTGGATTGAGCAGATTCTTCCTTTTTCGCTCTTGTTATTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCaaatgaaattgttaagaaaCAGACAGCTTTGAAGGGAGATAGAAAAGTCTCTTTGCTTGCTGGTATCTCTATTGCATTCATTCTTCACGTGGTATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGTCATGTTACCTCCAAGTCCGACACCTTTCTGGCATGCAATATTCACCATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTTCTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGCCGGCAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGTGCGTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTGAATAGGGAATACGGCAGTCTCTTTTCATCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCCGTTGTTGAGAAGGTCCAGTGCTTCATTTCTGCCTTGAAAGCGTTATCAAGAAAGGAAGTTCATTATGGGGTCTATGCCACAGCGGAACAGGTAACAGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCCCCCATCTTGCTACGTTGTAAACACATTTTCTGCGAAGATTGCGTATCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCTCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGGACCTTCGGAGATGGTTCTACAAGTTTGTTTTTCCAGTTGTTTTAA 1473 0.4162 METLDGNSEQYANVSSNSPSLSSSSSSSSFGGVNGDDNNGSVTWYGMRLPSVNPFLSPLSFLLDYSGILRSNNDSEAMIVNNGVSGSEIRSRVDSAAAVGESSAGEVAIRIIGAGEHIQNQVGEVGYDDCGEDLVGERSGIPALDDGDAEGRGGIEASEGVPLVSSASSSSLAGSGQVDGDPSGNGTENNSRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISIAFILHVVCIYWWYRNDDILYPLVMLPPSPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02663 490 MobiDBLite consensus disorder prediction 166 194 - -
Tsu05g02663 490 Pfam Zinc finger, C3HC4 type (RING finger) 427 471 - -
Tsu05g02663 490 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 14 490 IPR044235 GO:0061630|GO:1904294
Tsu05g02663 490 CDD RING-HC_RNFT1_like 428 467 - -
Tsu05g02663 490 SMART ring_2 429 466 IPR001841 -
Tsu05g02663 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 477 IPR013083 -
Tsu05g02663 490 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g02663 490 ProSitePatterns Zinc finger RING-type signature. 444 453 IPR017907 -
Tsu05g02663 490 SUPERFAMILY RING/U-box 422 471 - -
Tsu05g02663 490 ProSiteProfiles Zinc finger RING-type profile. 429 467 IPR001841 -
Tsu05g02663 490 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02663 Tsu-Chr5 36551715 36560479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02663 49 490 C3H Transcription Factor Family AT5G01960 62.556 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02663 - K22379 nnu:104612968 585.489