Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02658 ATGAAAATTTCTTGCAGTTTCCTCTTTATGATCATAATAACCACATTCCTATGTTATGAAACCATAGCTCAACCAAACTTTGTTCCAAAATGTTATACTAATAGTGGCAACTATACAACAAACAGCACATATCAACACAATCTTAACAAACTTTTATCAACTCTCACTTCCAACACAAAAATCACCTATGGTTTCTACAATTTCACCGAGGGCGTAGACAACAACAAAGTATACGCCATAGGATTATGCAGAGGAGATGTTGATCCACAAAACTGTCGGCAATGTCTCAACAATTCAAGATATCTTCTAACACAAAGCTgtccaaacaaaaaagaagcaaTTGGTTGGATTGATCATTGCATGTTGCATTACTCGCATCGATCCATATTTGGTTTAATGGAAACAACAGCTATAGTTACTCTGTGGAATGCATTTAACGCAACGGATGTTGATGAATATAATAAAGTGTTGGGAAAATTGTTGTATGATTTGAAAAGTGTAGCTGCATCTGGTGATTCTATGAAAAAATTTGCTACCGCGAATGTTACAGGTCCGAATTTTCAGGATATATATAGTCTTATGCAGTGTACACCTGATGTAAGTTCAATGGATTGTAATCAATGTTTGGATTTAGCTATTGCTCAACTTCCATCTTGTTGTGGAGATAAGATTGGTGCTAGAGTTTTTAGAGCAAGTTGTACTCTTAGATATGAAAGTTATAAGTTCTATGAACTTTCTGTTCAACCACGACAGCCGCCACCACCACCTAGTCCACCATCCATCAATCACACTTCCTCTCAAGGTAAAGCTCACACATTAAGAAATGTAACCATCATAGGAATTCtagttgttattgttgttttggttttctGTTTCATCTGCATCTATTTACGACTACGAGTGAAGAAGCCGAGTGAAACTACTCAAATTCCTTCAGAAGATGAGGATGAAATTACAACCTTTGAGTCATTACAATTCGACTTTGACACTATTAGAGTTGCTACAAATGACTTCAATGATTCTAATAAACTTGGAGAAGGCGGATTTGGAGCTGTTTATCAGGGAAAGCTCTCGAATGGACAAGTGATTGCTGTCAAAAGGTTGTCCAAGAATTCTGGCCAAGGAAATCTAGAATTTAAGAATGAAGTGCTTTTAATGGCCAAACTTCAACACCGAAATTTAGTTAGACTACTTGGTTTTACTATTGAAGGGCGAGAAAGACTACTCGTCTACGAGTTTGTTCCTAATAAAAGTCTTGACTACTTCATATTCGATCCAATAAAGAAAACACAATTAGATTGGGAAAAGCGCTACAAAATCATTCAAGGTACAGCTCGAGGCGTTCTGTATCTTCATGAGGACTCTCGACTACGTATTATACACCGCGACCTTAAAGCAAGCAACGTCCTCTTAGATGGAGATATGAATGCTAAGATATCTGATTTTGGCATGGCAAGACTAATTCTGGTGGATCAAACACAAGCAAATACAAGTAGAATTGTTGGAACTTATGGATATATGGCACCTGAGTACGTAATGCATGGAGAATTTTCAGTGAAATCCGATGTCTTTAGTTTTGGAGTATTAGTTCTTGAGATTATAAGTGGCCAAAAGAATAGTGGTAGTATTTGTCACGGGGACGATTCCTTGGATCTATTGAGTTTTGCATGGAAAAGTTGGAGGGAAGGAACAGCTGCAAGTATTATAGATCCATCACTATATAACAGTTCAAGAAATGAAATCTTGAGATGCCTTCATATTGGTTTACTTTGTGTTCAAGACAATGTAGCTAAAAGACCAACCATGGCTACCATTGTACTCATGCTAAGTAGTAATTCTCTCACTCTTTCATTACCTTCAGAACCTGCGTTTTTTATGGACAGTAGAACTAGAAGCATTCAAGAAATGAGGCAGTGGGAAGAGAACTCAGGGACAACAAGATCAAGTCAATCCACAACTAAATCAGCTCAAGAATCAGTTAATGAAGCTTCATTCACTGATCCTTATCCTCGTTAG 2016 0.3651 MKISCSFLFMIIITTFLCYETIAQPNFVPKCYTNSGNYTTNSTYQHNLNKLLSTLTSNTKITYGFYNFTEGVDNNKVYAIGLCRGDVDPQNCRQCLNNSRYLLTQSCPNKKEAIGWIDHCMLHYSHRSIFGLMETTAIVTLWNAFNATDVDEYNKVLGKLLYDLKSVAASGDSMKKFATANVTGPNFQDIYSLMQCTPDVSSMDCNQCLDLAIAQLPSCCGDKIGARVFRASCTLRYESYKFYELSVQPRQPPPPPSPPSINHTSSQGKAHTLRNVTIIGILVVIVVLVFCFICIYLRLRVKKPSETTQIPSEDEDEITTFESLQFDFDTIRVATNDFNDSNKLGEGGFGAVYQGKLSNGQVIAVKRLSKNSGQGNLEFKNEVLLMAKLQHRNLVRLLGFTIEGRERLLVYEFVPNKSLDYFIFDPIKKTQLDWEKRYKIIQGTARGVLYLHEDSRLRIIHRDLKASNVLLDGDMNAKISDFGMARLILVDQTQANTSRIVGTYGYMAPEYVMHGEFSVKSDVFSFGVLVLEIISGQKNSGSICHGDDSLDLLSFAWKSWREGTAASIIDPSLYNSSRNEILRCLHIGLLCVQDNVAKRPTMATIVLMLSSNSLTLSLPSEPAFFMDSRTRSIQEMRQWEENSGTTRSSQSTTKSAQESVNEASFTDPYPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02658 671 MobiDBLite consensus disorder prediction 637 664 - -
Tsu05g02658 671 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Tsu05g02658 671 MobiDBLite consensus disorder prediction 247 266 - -
Tsu05g02658 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Tsu05g02658 671 SUPERFAMILY Protein kinase-like (PK-like) 323 640 IPR011009 -
Tsu05g02658 671 CDD STKc_IRAK 344 606 - -
Tsu05g02658 671 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Tsu05g02658 671 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Tsu05g02658 671 ProSiteProfiles Protein kinase domain profile. 338 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02658 671 Gene3D Phosphorylase Kinase; domain 1 301 413 - -
Tsu05g02658 671 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 638 - -
Tsu05g02658 671 MobiDBLite consensus disorder prediction 635 671 - -
Tsu05g02658 671 Gene3D Transferase(Phosphotransferase) domain 1 414 617 - -
Tsu05g02658 671 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Tsu05g02658 671 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Tsu05g02658 671 Gene3D - 134 242 IPR038408 -
Tsu05g02658 671 Gene3D - 26 128 IPR038408 -
Tsu05g02658 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 638 - -
Tsu05g02658 671 SMART serkin_6 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02658 671 Pfam Protein tyrosine and serine/threonine kinase 341 606 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02658 Tsu-Chr5 36504685 36507770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02658 12 628 Receptor kinase-like Gene Family AT4G21410 49.074 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu05g02658 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02658 - - gmx:100782800 795.423