Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02644 ATGGGCAGGCGAAAAAGTAAACCGCATCGATCAGGTGGGATACTAGTCGAAGCAAATGCTACCGCTGAAGCAGAACCAGATAAACATAATGTTGTAgaaggaggagaagaagaaaaatgtgatGTTGATAAACCTTATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTTTAAGGGATTTAAATTTAAGAGAAGGTTTTAATGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCTCAATTCTCGTTAAGATTTCGGTTGTGTAATGTCAGTAATATTCTTGGTCGTATCAAACTTGGCCATTGGCCTGTGTTACCGTATACTGATATTCATCTAGAGTTTGTTAAAAGAGCTACAGTTGACAATAACGAAACATGCACAGTATTGTTATCTGGTATTTTTGATGGACCCGATGAAGGTGTTTCTGGTCTTGTTCACTTGACGAGTTTGAAATTTGTTACATTGAGGGCTGTTATTGGGATTAGGCTTTCTGAGGACACTCCTTCCCTCAGGATTAGGGTTGAGGTACTAAAGAGTGCGTTCGATGCATGCGAGTCACTTCTTGAGGTTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGTTACGACCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTTAGTAGCTACAtggacatggaagttgattcTCAGAATGAAATGGCAGACGACGGTGGCTATGCAGGGAAATGCTCAAGGTTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCTGAGTTACTTCCTGAACTTCGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAAAACGGGAAAAAGTAATGGAAGAAAGTCAGAGTGAGAGTGAAAGAAATCTGTTTCATTCTCCACTATGTGTGCCGGTGGATTTTCTGGACACAAGGACTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCCTGGGTAAAACTGTAGAATTGCTTGCTTGCATCTTTGCTCACCGTAAATCAGCATACGGAAGTGACATACTAATGGATTCAGTTCCCCAAGTCAATGGCGATGAAAAAGTAGCtttaaaaagactaaaaagAGAGCGTGTGGAGTGCATATGCGGAGCTGTGAGCGAAAGTCTCAAATATCAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAGtcactaaaatcaaaacaaggaTTGGAAAGAAAGGCATATAAAACTACCATAGCTGTGAGGAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACACGCTACTGAAACTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACACGTCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTTCGTGAAACATCTTTCTCAAATAAACCTCTGATGGATGTCAGTGATCTTGCGAGTGCAGACATTGTACTAACTACATATGAGGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATATAGGTGACCGACACCTTTTAAGATTTCAGAAAAGgTACCCGGTTATCCCAACTCTTCTTACTAGAATATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGCTACTGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGCGTTTCAGGGACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGATTCAATAAAACTAGTCCCTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGCTGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGCTTGTGTTAGAGATTCCCATGACGTTATTGAAAGTTTGAGAAATGATATTCTTAGTAGAAAAGTCCCAGATTCTGTCTCTATGAGTGGTTCCCCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTATTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCATACAGCAGTCACCTATGACAATAGAAGAAGTACTAACGGTCCTTATAAGCAAGACCAAGACAGAAGGTGAGGAAGCTCTCAGGATGTTAGTTATAGCTCTGAATGCACTTGCAGCAATATTTATAATACAAAAAGATTATTATCAAGCTGCTTTGGTGTACAATGAAGCTCTTACTTTGGCTGAAGAACATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATACACATTCATCATAATCTTGCTGAAATATTCCCCCTGGCTCAGAATTTTGCTTTGATCTTGCCATCCAAAGGAAAACAATTTTCTGGAACTTCTGCAGTTAATACAACAAAAAAGCATTTTATTGTAAAGGTTGATCATGATCAAGTGAAGAGGCATAAAATAAGTAGCTTTGATGACGCAAATTTAACAGTGGCTTCTGCAGAACCATCAAATGTTGCATCTAGCCTTTCAGAAAATGACTTAAACGATAGGGAATTTGATGATTTGTCGGCAAGTTCCGTCAAATATCTGATAGCTGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAACTAGCTGCAGCTCAGCAGGAGTTTCAAAGTTCTTACACACAGGTTTGTAAAGCATATCATGACACCGGAACAAATCAAACTACATTTTGGTGGTTAGAAGCACTTCATTATGCTGAGCAGAACAAGGATTTCTCAACCGAGTTGATTAGAAAGATTGAAGAAGCCCTCTCAGgaaattcaaacaattcaaaaTCGTCACGAATACCTGCTCGTTTTCGGAGCATAACCTCTCTGAAGTATCAAATTCAAACCGATTTGGATCAATTAGAAGCCTCTAGGAAAGTGTTATTAGATCGTCTGCTAGAAATTGATCAGACAATGGAAAAACCAAAAGATGAAGATATTGAGCGCGTTGGTAAATGTCGAAATTGTCAACCTAATTGTGATGCCCCCCCATGCATTCTGTGTGAAGTAGATGAATTGTTTCAGGCCTATGAAGCTAGACTCTTTGTTCTCAAGAACGAACGTGGTGGGATAATATCATCTGCGGAGGAGGCAGTagattttcaaaagaaaagttTTGCATTGAATCAATTTCTCTCAAAGCTATCGACATCTAATCAAAGTTCATCGGTGTCTGATATTGAACATGAAGAGTCCAGAAAAAGGAATGTTGGACAGAAAGTTGTGACTTCAAAATCGCCATCTATGCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCGGTTTGGAAAGGACAGTGTCTCAGCAGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTATGTCTATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATAAAGATGGCGATTTCTCGTTTACACCTAAAGGcaaatgaagatgatgaatctcTTGATGCTTTAGATGAAAATGAATTAACTGCGGCTAGCTCAAACTATTCCCAGGATAAGTTTATGTCATTGGCCTTGCTGTCACAGATAAAAGGAAAACTACGGTACTTAAAGAGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCAAGATAACTCTTTATGCACTCAAGATACAAATGCTATGTCAAACTCTATGGAAGAGAAGGGTGAACTCATACCTAAAAGTTATGAGGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCCATCGGAGAATGGTGTTTCAATGTGGTCATGTTACTTGCTGTAATTGTTTATTTGCTATGAGTGAGCAAAGACTTCAGCATAGCAAGACTCATAATTGGGTGATGTGCCCTACGTGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGCAGAAAAAGAATCTCCCAATTCTTCAATGCTGCATACAATTGACGGCTGTGAAAAACATGAAACATCTATTACTGTTAAAGGCTCATATGGAACCAAGATTGAAGCAATCACAAGAAGAATCTTGTGGATAAAGGCTACAGATCATAAATCAAAAGTTCTTGTATTTTCAAGCTGGAATGATGTACTTGATGTATTGGAACATGCGTTTGCCGCCAATAACATCACCTTCATCCGGATGAAGGGAGGCAGGAAAGCACACACTTCCATCAGTCAATTTAGAGGAAAACAGAATGGCACAAAAGGATGTGAGGGATCAGAACCTAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAACATGTGGTCCTTGTAGAGCCATTACTGAATCCAGCTGCCGAAGCACAAGCAATCAGTCGTGTACATCGCATTGGCCAAAAAAATAAGACCCTCATTCATCGTTTCATAGTAAAAGACACAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAAAAgtaatcattcattcattagtGGCAACACAAAAAATCAAGATCAACCCGTTTTGACCCTTAAAGATGTTGAATCCTTGTTGGCAAGAACACCATTAACAGCGCCTGAAATCGATGAAAATCCTACTACAAATACAAACCTGAGAGACTTGCCACCATCAGTTGCTGCAGCTATAGCAGCTGAGAGAAGACATAATGAGCAAAGAACATGA 5013 0.3908 MGRRKSKPHRSGGILVEANATAEAEPDKHNVVEGGEEEKCDVDKPYFVEVDRSGWLSDEHLDISEVVLRDLNLREGFNGFELSEDFYQDPQFSLRFRLCNVSNILGRIKLGHWPVLPYTDIHLEFVKRATVDNNETCTVLLSGIFDGPDEGVSGLVHLTSLKFVTLRAVIGIRLSEDTPSLRIRVEVLKSAFDACESLLEVSRQLWKKSMMNVMSWLRPEIMTSEVRYGFSSYMDMEVDSQNEMADDGGYAGKCSRFDPAGFYEAIKPSKAEPMLEDDIPELLPELRPYQRRAAFWMVKREKVMEESQSESERNLFHSPLCVPVDFLDTRTKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRKSAYGSDILMDSVPQVNGDEKVALKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGLERKAYKTTIAVRNGEYVCQMCSELIHATETPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGVRETSFSNKPLMDVSDLASADIVLTTYEVLKEDLSHDSDRHIGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESTVATAATEMALRLHCKHRWCVSGTPIQRKLDDLYGLLRFNKTSPFNIYRWWSEVIRDPYEKGDMGAMEFTHRIFKQIMWRSSKQHVADELDLPSQEECLSWLTLSPVEEHFYQRQHEACVRDSHDVIESLRNDILSRKVPDSVSMSGSPDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSIQQSPMTIEEVLTVLISKTKTEGEEALRMLVIALNALAAIFIIQKDYYQAALVYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEIFPLAQNFALILPSKGKQFSGTSAVNTTKKHFIVKVDHDQVKRHKISSFDDANLTVASAEPSNVASSLSENDLNDREFDDLSASSVKYLIAECEDSKQKYLSVFSSKLAAAQQEFQSSYTQVCKAYHDTGTNQTTFWWLEALHYAEQNKDFSTELIRKIEEALSGNSNNSKSSRIPARFRSITSLKYQIQTDLDQLEASRKVLLDRLLEIDQTMEKPKDEDIERVGKCRNCQPNCDAPPCILCEVDELFQAYEARLFVLKNERGGIISSAEEAVDFQKKSFALNQFLSKLSTSNQSSSVSDIEHEESRKRNVGQKVVTSKSPSMLEVLLGVIKNYCKTRFGKDSVSAATKHLHIFEGMRKEYVYARSLALAQAQYLRAHDEIKMAISRLHLKANEDDESLDALDENELTAASSNYSQDKFMSLALLSQIKGKLRYLKSLVQSKQKLPLESQDNSLCTQDTNAMSNSMEEKGELIPKSYEETCPICQEKLGHRRMVFQCGHVTCCNCLFAMSEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAEKESPNSSMLHTIDGCEKHETSITVKGSYGTKIEAITRRILWIKATDHKSKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHTSISQFRGKQNGTKGCEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSKSNHSFISGNTKNQDQPVLTLKDVESLLARTPLTAPEIDENPTTNTNLRDLPPSVAAAIAAERRHNEQRT 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02644 1670 SUPERFAMILY RING/U-box 1354 1407 - -
Tsu05g02644 1670 SMART helicmild6 1480 1572 IPR001650 -
Tsu05g02644 1670 SMART ultradead3 282 655 IPR014001 -
Tsu05g02644 1670 SMART ring_2 1355 1402 IPR001841 -
Tsu05g02644 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1643 - -
Tsu05g02644 1670 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Tsu05g02644 1670 SMART PHD_3 411 479 IPR001965 -
Tsu05g02644 1670 Gene3D - 479 707 IPR038718 -
Tsu05g02644 1670 Gene3D - 349 390 IPR038718 -
Tsu05g02644 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 685 IPR027417 -
Tsu05g02644 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 1636 IPR027417 -
Tsu05g02644 1670 CDD PHD_TCF19_like 413 478 - -
Tsu05g02644 1670 Pfam PHD-finger 412 480 IPR019787 -
Tsu05g02644 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 478 IPR013083 -
Tsu05g02644 1670 Pfam Helicase conserved C-terminal domain 1449 1572 IPR001650 -
Tsu05g02644 1670 ProSitePatterns Zinc finger PHD-type signature. 412 478 IPR019786 -
Tsu05g02644 1670 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g02644 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1339 1406 IPR013083 -
Tsu05g02644 1670 SUPERFAMILY FYVE/PHD zinc finger 408 483 IPR011011 -
Tsu05g02644 1670 CDD DEXQc_SHPRH 286 686 - -
Tsu05g02644 1670 Gene3D - 1407 1652 IPR027417 -
Tsu05g02644 1670 Pfam SNF2-related domain 289 782 IPR000330 GO:0005524|GO:0140658
Tsu05g02644 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1625 IPR001650 -
Tsu05g02644 1670 CDD SF2_C_SNF 1446 1583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02644 Tsu-Chr5 36343781 36359814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02644 282 780 RAD5 or RAD16-like Gene Family AT5G22750 27.129 3.27e-41 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu05g02644 SNF2_N 1.1e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02644 K15710 - gmx:100776659 2732.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02644 05 36343781 36359814 Tsu05g02644 05 36343781 36359814 ECH