Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02641 ATGAAGTTGCTTTCACTACCAATGATGTTCCCTCTAATACTGTTGATTAGTTCGTTTTATCTTGGTAATGCAATAGATTGTGGTGGCAATCAAATTGCAAATACCATTGTTGTTAACCAACAAGGTCAAGGAGAATTCCAAACAATTCAAGCAGCCATTGATTCTATAAAGAGCCAAAATAATCAATGGATTTTGCTTCAAATAAATCCTGGCATATATaaGGAAAAAGTTCATATACCTATTGAAAAGCCGTGCATTATTTTAAAAGGATCGGGTAGCAAAGCAACAATCATTGTTTACGATGATTCGGCTAATAATGTTGGCACATCTGATAGCGCTACATTCATTTCACCTCCACCTAACGTGGTTGTGAGTGGCATTTCATTTAAGaataCATATGGACCTAACGGACCTGCAGTAGCAGCTAACTTTTATGGTGATAAATCAGCCATATTTGAATGTAGTTTCTTTGGTTACCAAGATACATTGCTCATATCATCTGGACGCTCTTactttaaaaattgttttattcaaGGTGAAGTGGACTTCATTTTTGGTTCTGGTCAATCCTATTTTGAgAATTGTGTCATTAATGCTGTACAAGGAAAATCTAGACCTACAGGTTTTGTCACTGCACAACTTAGAGATAAACCAAATGACCCAAATGGATTTGTTTTTAAAGGAGGGTCTGTTGTTGGAATTGGTCAAGTGAATCTTGGAAGACCTTGGGGACCTTACTCAAGAGTCATATTTTGGGATACATATTTATCATCTGTGGTAACTCCTCAAGGATGGGACCTTTGGCATGTGAGAAACGACCAAGAGTAA 828 0.3623 MKLLSLPMMFPLILLISSFYLGNAIDCGGNQIANTIVVNQQGQGEFQTIQAAIDSIKSQNNQWILLQINPGIYKEKVHIPIEKPCIILKGSGSKATIIVYDDSANNVGTSDSATFISPPPNVVVSGISFKNTYGPNGPAVAANFYGDKSAIFECSFFGYQDTLLISSGRSYFKNCFIQGEVDFIFGSGQSYFENCVINAVQGKSRPTGFVTAQLRDKPNDPNGFVFKGGSVVGIGQVNLGRPWGPYSRVIFWDTYLSSVVTPQGWDLWHVRNDQE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02641 275 Pfam Pectinesterase 36 269 IPR000070 GO:0030599|GO:0042545
Tsu05g02641 275 Gene3D - 29 275 IPR012334 -
Tsu05g02641 275 SUPERFAMILY Pectin lyase-like 32 269 IPR011050 -
Tsu05g02641 275 PANTHER PECTINESTERASE 1 272 - -
Tsu05g02641 275 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02641 Tsu-Chr5 36330852 36333936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02641 10 274 Carbohydrate Esterase AT2G19150 46.182 1.30e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02641 - - mtr:MTR_5g088290 336.265