Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02640 ATGGTTGTGAGTGGTATTTCATTCGAGaatacaTATGGACCCAACGTACCTGCAGTTGCAGCTAACTTTTATGGTGATAAATCAGCCATATTTGAAAGTAGTTTCTTTGGTTATCAAGATACATTGCTCATATCATCTGGACgctcttattttaaaaattgtcttATTCAAGGTGAAGTGGACTTCATCTTTGGTTCGGGTCAATCTTATTTTGAGAATTGTGTCATTAATGCTGTACAAGAAAACTCCAGACTTGTAGGTTTTGTCACAGCACAATATAGAGATAAACCAAATGACCCAAACGGATTTGTTTTTAAAGGAGGGTCTGTTGTTGGAACTGGTCAAGTGAATCTTGGAAGACCTTGGGGCCCTTACTCAAGAGTTATATTTTGGGATACATATTTTTCATCTGTGGTAACTCCTCAAGGATGGGACCTTTGGCATGTGAGAAACGACCAAGAgcAAAATATCATCTTTGCAGAAGTTAATTGTAAAGGACCAGGGGCCAATATTATGAACCGTGTCAACTGGGAGAAAAATGCAAATAGCATAAACTTAAATGAATATACTTTATCATCTTTTATAAATTATGATGGGTGGCTTGCTAATTTACCGTCTAATGGCGGGGCAGAGCTAATGCAAAACAACCAACATGCGATGCATAATTATGAACAGCAGCAACAAGTAACTCAGTGGCAGAAGCCTCCTCCGGAGCGGTATAAATGCAATGTAGACGCAGGATTTCATAGTGAACTAAATAAAACAAGTGTAGGCTGCATTTTGAGAAACCATACGGGTCAATTTGTGTTGGCGGGAACAGCTTGA 825 0.3782 MVVSGISFENTYGPNVPAVAANFYGDKSAIFESSFFGYQDTLLISSGRSYFKNCLIQGEVDFIFGSGQSYFENCVINAVQENSRLVGFVTAQYRDKPNDPNGFVFKGGSVVGTGQVNLGRPWGPYSRVIFWDTYFSSVVTPQGWDLWHVRNDQEQNIIFAEVNCKGPGANIMNRVNWEKNANSINLNEYTLSSFINYDGWLANLPSNGGAELMQNNQHAMHNYEQQQQVTQWQKPPPERYKCNVDAGFHSELNKTSVGCILRNHTGQFVLAGTA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02640 274 Pfam Pectinesterase 3 196 IPR000070 GO:0030599|GO:0042545
Tsu05g02640 274 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 206 - -
Tsu05g02640 274 Gene3D - 1 210 IPR012334 -
Tsu05g02640 274 PANTHER PECTINESTERASE 2 206 - -
Tsu05g02640 274 SUPERFAMILY Pectin lyase-like 2 202 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02640 Tsu-Chr5 36322242 36326297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02640 1 153 Carbohydrate Esterase AT2G19150 45.679 1.98e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02640 - - mtr:MTR_5g088290 270.781