Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02639 atggataataataataataatatctctAAAAGTGTGAAAAAGAAGGTTGTAATCAATGAGCTTGTTAAGGGACAAGAAGCTGCAACAAAACTCAAGTTTCTTCTTCAGAATCAAAAGAATTATCCCTTTGGTTATGGCTCTCTTTCATCCTATAAACTTGCTGCAAATGTGCTCAGATCTTTCACTGAGGCTCTTTCTATTATCTCTCAACCAGCTGGTTGTGATGATTTTCTCAATCTTCTCGATTCCGGCGAAAATAAGTTGCCGGTTGTCGTCTCCGGTAATCATCCCCCATCTCGTGGGATTAAGAAGAGTTCATTGCCTGCTAAGGGTGGTAGAGGTTGCTACAAAAGAAgGAAGAATGAAGAGACATGGAGCATAGTTTCCTCTAATATTGATGATAATCATTCTTGGAGAAAGTATggacagaaggaaatcatgaatTCTGAATTCCCTAGGAGTTACTTGAGGTGCAGATTTAAGAATGATCAAGGTTGCTTAGCAACAAAACAAGTGCAAAAGACACAAGATAATCCTGATATGTATCAACTTACTTACATTGGCATTCATACATGCAACACCACCCTTAATAATGAGGAAGTTCTTGTGAATTCTGATCCCGATGAAGTGAAACTACTAACACAAAGCCTAACTATAAAACAAGAATATCCCAAACAAGAACCTAGTAAAGTTATGGAATCTGATGATAATGCTGATGCTTTGTTGGTGTTTCAAAGTTTAGCACTGGAATTTGGAGACACTGATTTCTACTTTGATGAAAATTAA 786 0.3511 MDNNNNNISKSVKKKVVINELVKGQEAATKLKFLLQNQKNYPFGYGSLSSYKLAANVLRSFTEALSIISQPAGCDDFLNLLDSGENKLPVVVSGNHPPSRGIKKSSLPAKGGRGCYKRRKNEETWSIVSSNIDDNHSWRKYGQKEIMNSEFPRSYLRCRFKNDQGCLATKQVQKTQDNPDMYQLTYIGIHTCNTTLNNEEVLVNSDPDEVKLLTQSLTIKQEYPKQEPSKVMESDDNADALLVFQSLALEFGDTDFYFDEN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02639 261 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 232 IPR044810 GO:0003700
Tsu05g02639 261 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 8 232 - -
Tsu05g02639 261 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02639 261 Gene3D WRKY domain 120 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02639 261 ProSiteProfiles WRKY domain profile. 132 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02639 261 SUPERFAMILY WRKY DNA-binding domain 130 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02639 261 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02639 Tsu-Chr5 36293788 36297799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02639 12 261 WRKY Transcription Factor Family AT3G56400 33.555 3.85e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g02639 WRKY 8.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02639 - - mtr:MTR_5g067700 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01450 07 13014689 13017264 Tsu05g02639 05 36293788 36297799 ECH
Tsu05g02639 05 36293788 36297799 Tsu05g02639 05 36293788 36297799 ECH