Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02631 atgGCACCTAAACACGATGCAATTTCTGAAATTTCTCCGGCCAAAGAAAATTGGAATTTGATAGTCAGAGTCGTACGTCTTTGGTACGTTAAGGATATGGCAAGAGATAAACTACCATTCTCAATGGAGATGGTGCTTATGGATTCTAAAGGTGATCGCATTCACGCCACTGTCCGTCGGACGTTGATTTATAAGTTTGAGAAAGATCTTAAAGAGGACACTGTATTTGCCATTTCCAATTTTGGTGTTGCGGCAAACATTGGTTCATATCGAACCACCAGACATTCTTATAAGCTGAATTTTCAATTTGCAACAAGGATTAAAATTTCTGAAAATCGTTTTGTCCCACCAAACTTATACTTGATTAGTAATCCAAGTGAGATTTTTTCAGGTCAGTATGATACTGACTATTTGGTTGatgttaTGGGAATGTTGACTGCGGTGGGTGTGGAGAAAACCTACCACAGAAATGGAACTCAATCAAAAATGGTTGTTGTAGAACTGGACAATGATGGATACCGTTTCAAGTGTACCTTATTTGGTTCGTATGTCGACATGTTGAACTCTTATCTTGCATCAGGAGAGACTGAAAATGTTGTTGTGGTCATTCTTTTGGCTAAAGTTAAAATCTTTCAAGGTAGGGCAACTGTTCAAAACACAATATACTCTACAAAAATACTTTTCAATCCAGTGTTTTCTGCTGCAGTTGATCTTAAGAAAAGGATGATTGAGAATAATGATACCCCTTCACCGGGTATTTCTCGGCTGCAAGATAATTCAAAGATTTCCCTTATGGAAGACTTTATACAAGTCAATCCATATTCATCAATTGAGGGCTTGAAAGAATCCCGTGTGGAGGGTGTGTTTGTTGTCTGTGCAACAATCaaagtcattgttgatgataatgattggTGGTACACGGCCTGCATCTGTAACAAGAAAGTATATCCTGATGAGAGGATGTACTTTTGTGAGAAGTGCAACAAGCACGTTCTCAATGTTACCCCAAGTGATGGATGTTCCTTCCATATCCACATATCCTACTCTTACATGTGA 1056 0.375 MAPKHDAISEISPAKENWNLIVRVVRLWYVKDMARDKLPFSMEMVLMDSKGDRIHATVRRTLIYKFEKDLKEDTVFAISNFGVAANIGSYRTTRHSYKLNFQFATRIKISENRFVPPNLYLISNPSEIFSGQYDTDYLVDVMGMLTAVGVEKTYHRNGTQSKMVVVELDNDGYRFKCTLFGSYVDMLNSYLASGETENVVVVILLAKVKIFQGRATVQNTIYSTKILFNPVFSAAVDLKKRMIENNDTPSPGISRLQDNSKISLMEDFIQVNPYSSIEGLKESRVEGVFVVCATIKVIVDDNDWWYTACICNKKVYPDERMYFCEKCNKHVLNVTPSDGCSFHIHISYSYM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02631 351 Gene3D - 115 250 IPR012340 -
Tsu05g02631 351 Gene3D - 6 112 IPR012340 -
Tsu05g02631 351 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 19 335 - -
Tsu05g02631 351 Gene3D - 257 348 IPR012340 -
Tsu05g02631 351 CDD RPA1_DBD_B_like 140 243 - -
Tsu05g02631 351 SUPERFAMILY Nucleic acid-binding proteins 286 334 IPR012340 -
Tsu05g02631 351 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Tsu05g02631 351 CDD RPA1_DBD_A_like 22 107 - -
Tsu05g02631 351 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Tsu05g02631 351 PANTHER REPLICATION FACTOR A 1, RFA1 19 335 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu05g02631 351 SUPERFAMILY Nucleic acid-binding proteins 133 241 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02631 Tsu-Chr5 36163927 36165994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02631 11 329 Core DNA Replication Machinery Family AT5G08020 24.566 7.52e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02631 - - mtr:MTR_2g048560 488.419