Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02621 ATGTCTCTACCAAGGCTAGGAATAGGTGATAAAGAAGGTGAAAACAATGTTACTTTGTTGGAAAAAAGTGTGTGTTTGAATGGTTCAAAACCAAAAGAGTTCAACTACATGGGATTATCATCATCTAATTGTTCATCAGTGGATAGTTCAGTTCCAAAAATGCAATCTTTTTGTGATGAGACTAAAAGTAATTTGAATCTTAAAGCTACTGAGCTTAGATTGGGACTTCCAGGATCATTGTCACCTGAAAGAGATTCATCAGATCTTTTTTTGAGAAGTTCAAATCAGTTTGATGAAAAGCCTCTTTTTCCTTTACACCCTCAAAAAGATGATCATCTTTTTGAATCAAAGCCTGCTGTTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGAATGTTTTCTCAGAGGCGAAATTGAAGCCTAGCTCCAAATTGCTTGAGAGTGTTGCGGCGCAGAAAGTGAAAGCCGATGAAATAGTAACAGTTAAGGTTGGCCTTGAGAGGCCTCATGGTGTCGGTGAAAGCAGACCAAGTCTTAATGGTTCTGCAAATAATGGAAATAGCATCGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAAAACTCACTAACCACTGCTTCAAAGAACACCGAAGAGGTTGATGGAAAATTGGGATCAGGAGGTGCCGTGTTTGTGAAGGTCAGCATGGACGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACACTGCATATTCACAACTATCGTCTGCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACCAAGTTAAAGGATCTTCTTCATGGGTCCGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTAGGTGATGTTCCTTGGGAGATGTTTATTGATACATGCAAGAGACTAAGAATCATGAAGAGCTCTGATGCCATTGGTCTAGCCCCTAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAG 1044 0.3956 MSLPRLGIGDKEGENNVTLLEKSVCLNGSKPKEFNYMGLSSSNCSSVDSSVPKMQSFCDETKSNLNLKATELRLGLPGSLSPERDSSDLFLRSSNQFDEKPLFPLHPQKDDHLFESKPAVLGNKRGFSDAMNVFSEAKLKPSSKLLESVAAQKVKADEIVTVKVGLERPHGVGESRPSLNGSANNGNSIAPATKAQVVGWPPIRSFRKNSLTTASKNTEEVDGKLGSGGAVFVKVSMDGAPYLRKVDLKNYTAYSQLSSALEKMFSCFTIGQCESHGNQMLNETKLKDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSSDAIGLAPRAVEKSKSRN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02621 347 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 341 IPR003311 GO:0005634|GO:0006355
Tsu05g02621 347 ProSiteProfiles PB1 domain profile. 230 329 IPR000270 GO:0005515
Tsu05g02621 347 PANTHER AUXIN-INDUCED PROTEIN 19 341 - -
Tsu05g02621 347 Gene3D - 226 341 - -
Tsu05g02621 347 Pfam AUX/IAA family 70 338 IPR033389 -
Tsu05g02621 347 SUPERFAMILY CAD & PB1 domains 226 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02621 Tsu-Chr5 36029069 36032876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02621 214 337 B3 DNA Binding Superfamily AT4G23980 29.839 4.97e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu05g02621 AUX_IAA 2.2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02621 K14484 - gmx:100815447 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02621 05 36029069 36032876 Tsu05g02621 05 36029069 36032876 ECH