Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02612 ATGGCTTTTGAGGGAAACAACGCTGCAAGAAAAGAAAACACACGGAAgagaaaaattgatgaaatcaAGAAAGTGGACTTTTCAAATCGCAAAATTGGACTCTTCAACAAAGTAATAGAACTCTCTATTTTGTGCAAAGCAAAAACTGCACTCATCATCAGGTCGCCCGACAACGAACTATGTGCATGTGGTTATCCTGATTCTGACGCTGTCATTCAATTTTATCTAAATGGAAAAGCCATCATCGAGGATAATGACAAAAAGATGCAAGAGGAGGTTGTGGAAACCCTAAGGCTTGAATATGAACCAATTGAAGATAAACTTAAGGAACTTAAGAAAGAGGAGAACAATTGGAAAGCTAATGAGGCTGGGAAGAGTGGTTATGCTTTTCCTCAATGGTGGGATTGTTCTATTGACAACATGAATTTAGAATCTCTCGAGGAATTTAAGAATTCTTTAGAATCATTGAAACTTAATTTGAAACTTAGCTTAGATGCAAAGAAGTTAATGTAG 513 0.3548 MAFEGNNAARKENTRKRKIDEIKKVDFSNRKIGLFNKVIELSILCKAKTALIIRSPDNELCACGYPDSDAVIQFYLNGKAIIEDNDKKMQEEVVETLRLEYEPIEDKLKELKKEENNWKANEAGKSGYAFPQWWDCSIDNMNLESLEEFKNSLESLKLNLKLSLDAKKLM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02612 170 SMART madsneu2 14 66 IPR002100 GO:0003677|GO:0046983
Tsu05g02612 170 Coils Coil 94 121 - -
Tsu05g02612 170 Coils Coil 146 166 - -
Tsu05g02612 170 Gene3D - 20 103 IPR036879 GO:0003677|GO:0046983
Tsu05g02612 170 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 16 168 - -
Tsu05g02612 170 SUPERFAMILY SRF-like 11 77 IPR036879 GO:0003677|GO:0046983
Tsu05g02612 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 60 IPR002100 GO:0003677|GO:0046983
Tsu05g02612 170 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Tsu05g02612 170 PANTHER MADS BOX PROTEIN 16 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02612 Tsu-Chr5 35884592 35885104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02612 11 157 Type I MADS-box Gene Family AT5G60440 28.750 6.46e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g02612 SRF-TF 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02612 - - cam:101507050 141.354