LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g02601	ATGGGGAGAGGAAAGATCCAGATAAGGAGGATTGATAATTCAACGAGTAGACAAGTTACTTTTTCAAAGCGAAGAAACGGTTTGTTGAAGAAGGCAAAAGAACTTGCGATTTTGTGCGATGCTGAAGTAGGAGTTGTTATCTTCTCTAGCACTGCAAAACTCTACGATTTCGCGAGTACCAGCATGAGATCGGTAATCGATCGATACAACAAATCAAAAGAAGAACATAATCAACTTGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGACAACAATTGCATAATTTGCAAGAAAGTCATCGGCAAATAATGGGTGAAGAATTGTCAGGTTTGACAGTCAAAGAATTACAGAATTTGGAGAACCAATTAGAAATCAGCCTTCGTGGTGTTCGTGTGAAAAAGGAGCAACTTTTTATGGATGAAATACAAGAACTAAATCGAAAGGGGGACATCATACACCAAGAAAATGTGGAACTATATAGGAAGGTAAACCTAATTTGTCAAGAAAATATGGAATTGAAAAAGAACATATTGGTTTGTATGGCAATAGAAACTAAACTTTTTAAACGAGGCAACCTTTATGTGTTATATTCTGATCTCCAAAAGAGACTTTCACTAACTCAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTCTGTTCTCACCGATGGTCTAGGCATAGGAGAAGGAGACGATTCCCACGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCAACAACACTACAAGGCACCCTCAGGAACTACAAAACTGGGACTACAATTGCATTGA	822	0.3905	MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTAKLYDFASTSMRSVIDRYNKSKEEHNQLGSSASEIKFWQREAAMLRQQLHNLQESHRQIMGEELSGLTVKELQNLENQLEISLRGVRVKKEQLFMDEIQELNRKGDIIHQENVELYRKVNLICQENMELKKNILVCMAIETKLFKRGNLYVLYSDLQKRLSLTQVYGTKDKNGTNRNSVLTDGLGIGEGDDSHVPVNLQLSQPQQQHYKAPSGTTKLGLQLH	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g02601	273	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1	213	273	-	-
	Tsu05g02601	273	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu05g02601	273	MobiDBLite	consensus disorder prediction	253	273	-	-
	Tsu05g02601	273	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Tsu05g02601	273	Pfam	K-box region	84	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu05g02601	273	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1	1	185	-	-
	Tsu05g02601	273	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	185	-	-
	Tsu05g02601	273	Gene3D	-	13	109	IPR036879	GO:0003677\|GO:0046983
	Tsu05g02601	273	SUPERFAMILY	SRF-like	2	81	IPR036879	GO:0003677\|GO:0046983
	Tsu05g02601	273	Coils	Coil	86	106	-	-
	Tsu05g02601	273	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Tsu05g02601	273	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	213	273	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g02601	Tsu-Chr5	35676568	35701559	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g02601	1	265	MADS-box Gene Family	AT2G22630	53.208	3.51e-91	268

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tsu05g02601		K-box	1.1e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g02601	K09264		-	gmx:100812413	395.201

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu05g02601	05	35676568	35701559	Tsu05g02601	05	35676568	35701559	ECH