Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02598 ATGTCCTCACAAGCAGTTCAATTACATGTCAAGAAAAACCATGTGGTTTTGGATAATGGTATACTACAAGTGTATATATCAAATCCAGATGGATTTGTCACTAGAATACATTATAACGGCATTGATAATCTGCTTGAAGCTCTTAACGAAAAGAATAATAGAGGGTATTGGGATCTTGTTTGGAGTGAAGCAGGAAGCACCGGAACAACAGGGACATCCGAGCGGATTGTGGGAACAAGTTTTAAGGTTATAATGGAAACAGAGGAACAAGTTGAAATCTCATTTACCAGAATATGGGATCTATCTCTAAAGGGAAAGCAATCAGCTCTAAATATAGACAAAAGGTATGTGATGTTACGCAATTCGTCGGGATTCTACTCTTATGCTATCTTTGAGCACCTAAAGGAGTGGCCAGCTTTTAACATACCTCAAATAAGGATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTACATGGTTGTGGCTGATAATAGACAAAGGTTGATGCCTCTACCTGATGACCGATTATCTGGAAGAGGAGAAGAACTTGTTCCTCCAGAAGCTGTTTTGCTTGTTAATCCAGTGGAACCAGAGTTCAAAGGAGAGGTTGATGACAAGTACCAATACTCTAGTGAGAACATAGACCTTAAGGTTCATGGATGGATAAGTACAAATTCTGAAACGAATCCAGCAACAGGGTTTTGGGTAATCATACCCAGCAATGAGTTTCGATCAGGTGGTCTTGTTAAACAGAATCTTACCTCCCATGTTGGCCCCATCAGTCTTGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAGCCCAATGAGCCATGGAAGAAAGTTCTTGGGCCAACTTTTGTGTATCTTAACACCTTGTTGGATGGTAATGAAGACCCACTAGAGCTTTGGGAGGATGCCAAATATCAGATGAACAAGGAAGTACAAAGTTGGCCCTATGATTTTCCAGCTTCAGATGATTTTCAAAACTCAAACCAACGTGGCAGCGTTTGTGGCACATTACTAGTTCTTGACAGGTGTGTAAGTGACGAGTGCATAATAGCACAAGGTGCATACATAGGATTGGCACCACCAGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACCAAAGCAAACGAGGAAGGCTTCTTTTCAATCAATAATATAAGGAGTGGGGATTACAATCTATATGCATGGGTTCCAGGTTTTATTGGAGAATATTGGAACAATGGAGTCCTCAAAATAACCCCAGGTTGTGAAATAAATGTTGGTGGCATTATTTATGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATTGGAATTCCTGATCGCTCTGCTGCTGAGTTCTATGTTCCAGATCCTAATCCAAAATTCATAAACAAGCTTTTTATAGATCATCCAGACAAGTTTAGACAATATGGCTTGTGGGAAAGATATGCAGAGTTATACCCAAATGAAGATTTGATTTATACCGTTGGTATCAGTGACTACACAAAAGATTGGTTCTATGCCCAGGTCACCAGGAAGAAAAATGATGGCACTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTAGATGATGTGGAACCAAATGGAATATATAAATTGCGATTGGCTCTTGCATGTGCAAATGTGTCTGAGTTACAAgTTAGAGTGAATGATGTGAAACAAGATCCTCCACTATTTACTACGGGTGTTATTGGAAAGGACAATGCAATTGCTAGACATGGAATTCATGGACTCTATTGGCTCTTCAACATTGATGTGCCAAGTATTTTGCTATCAGAAGGAGATAATACTATCTTTCTAACACAAACTATGGCTACTGGCCCCTTGGCTCTCTTTCAAGGAATAATGTATGACTATATTCGTTTAGAAGGCCCCAACCCTGTTTCTTCTCATTAG 1947 0.3975 MSSQAVQLHVKKNHVVLDNGILQVYISNPDGFVTRIHYNGIDNLLEALNEKNNRGYWDLVWSEAGSTGTTGTSERIVGTSFKVIMETEEQVEISFTRIWDLSLKGKQSALNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMVVADNRQRLMPLPDDRLSGRGEELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENIDLKVHGWISTNSETNPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVLGPTFVYLNTLLDGNEDPLELWEDAKYQMNKEVQSWPYDFPASDDFQNSNQRGSVCGTLLVLDRCVSDECIIAQGAYIGLAPPGDVGSWQRECKGYQFWTKANEEGFFSINNIRSGDYNLYAWVPGFIGEYWNNGVLKITPGCEINVGGIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLFIDHPDKFRQYGLWERYAELYPNEDLIYTVGISDYTKDWFYAQVTRKKNDGTYQGTTWQIKFNLDDVEPNGIYKLRLALACANVSELQVRVNDVKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVPSILLSEGDNTIFLTQTMATGPLALFQGIMYDYIRLEGPNPVSSH 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02598 648 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Tsu05g02598 648 Gene3D - 5 276 IPR014718 GO:0030246
Tsu05g02598 648 SUPERFAMILY Starch-binding domain-like 382 421 IPR013784 GO:0030246
Tsu05g02598 648 CDD RGL4_M 339 438 IPR029413 -
Tsu05g02598 648 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
Tsu05g02598 648 Gene3D - 446 640 - -
Tsu05g02598 648 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Tsu05g02598 648 CDD RGL4_C 450 640 - -
Tsu05g02598 648 CDD RGL4_N 8 298 - -
Tsu05g02598 648 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 646 - -
Tsu05g02598 648 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Tsu05g02598 648 PANTHER LG27/30-LIKE GENE 1 646 - -
Tsu05g02598 648 Gene3D - 337 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02598 Tsu-Chr5 35621595 35632193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02598 1 643 Polysaccharide Lyase AT1G09890 64.230 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02598 K18195 - gmx:100815677 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02598 05 35621595 35632193 Tsu05g02598 05 35621595 35632193 ECH