Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g02588 | ATGACGACCAAAGATTATATTAACTCTCCAAGAGATTTAGAAGGCCATGGGACTCATGCATCATCAATTGCAGCAGGGAACCTAGTTAACATGGCAAGCATGTTTGGGTTTGCACAAGGGACGATAAGAGGTGGAGTCCCATCGGCACGTGACAAAAAAACATATGAGGGTGTTTCATTAAACACATTTGACCTTGAGGGTAAATTCTACCCAATCGTCTACGGTGGAGATGTATCAAACACTGTAGCCGGTGTTGATGGACACAAATCCAGGTTTTGCCAACCCAACACATTGAATAATACCTTAGTGAAAGGTAAAATTGTTCTTTGTGAAATTGATGAAAACTTGGGATTTGTAGAGGTCATGAGAATGGGTGTTGTTGGTCTCTTGATATGGGGTAAAGCttataaggatgatgcataccCTTTTCCCTTGCCTGCATGTTACCTTCAACCAAAGGATGGCGCTAAGATATATAAATACATTCGATCTACAAGGAGGCCAAGTGCAACCATATTTAGGACTGTTGAATTAAATGATACACTGGCACCTATGGTTGCCTCTTTCTCATCAAGGGGTCCAAACAATGTTACAGCTGATATTCTCAAGCCGGATTTAATTGCTCCCGGGGTAAACATTTTAGCTAGTTGGTCAACAATTACTCCGATTTCAGATTATCTTGGTGAGAACAGAAAATCGGAGTATAAAATTGTTTCAGGAACATCAATGGCATGCCCCCATGTATCTGGTGCAGCAGCATTCATCAAATCTTTCCATCCCACATGGTCGCCAGCTGCTATCCGTTCTTCTCTAATGACAACGGCTAAACAGATGAGTCCCCGAAATATGGCTTATGCAGAATTTGGCTATGGAGCTGGTGAAATTGACCCTGTGAAAGCTTTGAATCCCGTTCTTATCTATGATGCTAACGCCGAtgattattttagatttttatgtGGAGTGGGATTCAATAAAAcaattcttcaaaaaataaccAGGGATAATAGCACTTGCTCCAATACAACACACATATCGGCAAGGTATTTAAATTATCCGTCATTTGCACTAAAAGCCCTACCTCCTAAATACCAAGTAAATGGAAGCTTTCATAGGACAGTCACAAATGTAGGATTACCTATTTCTACATATAAAGCAATTGTGACAGCTCCAAAAGGAGTGAAGATTTCGGTGAACCCCAATGTTCTATCATTCACTTCAGTGGGAGAAAAGAAGACTTATGTTCTCACTATAAAAGGTGCAATGAAAAAAGCTAATATTGGAGCAAGATTTATCCGACCAAAATCCATATTTTGA | 1314 | 0.3874 | MTTKDYINSPRDLEGHGTHASSIAAGNLVNMASMFGFAQGTIRGGVPSARDKKTYEGVSLNTFDLEGKFYPIVYGGDVSNTVAGVDGHKSRFCQPNTLNNTLVKGKIVLCEIDENLGFVEVMRMGVVGLLIWGKAYKDDAYPFPLPACYLQPKDGAKIYKYIRSTRRPSATIFRTVELNDTLAPMVASFSSRGPNNVTADILKPDLIAPGVNILASWSTITPISDYLGENRKSEYKIVSGTSMACPHVSGAAAFIKSFHPTWSPAAIRSSLMTTAKQMSPRNMAYAEFGYGAGEIDPVKALNPVLIYDANADDYFRFLCGVGFNKTILQKITRDNSTCSNTTHISARYLNYPSFALKALPPKYQVNGSFHRTVTNVGLPISTYKAIVTAPKGVKISVNPNVLSFTSVGEKKTYVLTIKGAMKKANIGARFIRPKSIF | 437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g02588 | 437 | Pfam | Fibronectin type-III domain | 349 | 422 | IPR041469 | - | |
| Tsu05g02588 | 437 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 5 | 50 | IPR045051 | - | |
| Tsu05g02588 | 437 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 56 | 423 | IPR045051 | - | |
| Tsu05g02588 | 437 | Gene3D | Peptidase S8/S53 domain | 180 | 314 | IPR036852 | GO:0004252|GO:0006508 | |
| Tsu05g02588 | 437 | Gene3D | Peptidase S8/S53 domain | 5 | 50 | IPR036852 | GO:0004252|GO:0006508 | |
| Tsu05g02588 | 437 | Pfam | Subtilase family | 182 | 291 | IPR000209 | GO:0006508|GO:0008236 | |
| Tsu05g02588 | 437 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 1 | 301 | - | - | |
| Tsu05g02588 | 437 | SUPERFAMILY | Subtilisin-like | 7 | 302 | IPR036852 | GO:0004252|GO:0006508 | |
| Tsu05g02588 | 437 | PANTHER | CUCUMISIN-LIKE | 5 | 50 | - | - | |
| Tsu05g02588 | 437 | PANTHER | CUCUMISIN-LIKE | 56 | 423 | - | - | |
| Tsu05g02588 | 437 | Gene3D | - | 51 | 179 | - | - | |
| Tsu05g02588 | 437 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 240 | 250 | IPR023828 | - | |
| Tsu05g02588 | 437 | PRINTS | Subtilisin serine protease family (S8) signature | 12 | 25 | IPR015500 | - | |
| Tsu05g02588 | 437 | PRINTS | Subtilisin serine protease family (S8) signature | 239 | 255 | IPR015500 | - | |
| Tsu05g02588 | 437 | Gene3D | - | 318 | 431 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu05g02588 | Tsu-Chr5 | 35384604 | 35388530 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu05g02588 | 6 | 50 | Subtilisin-like Serine Gene Family | AT5G59190 | 66.667 | 5.72e-12 | 65.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu05g02588 | - | - | cam:101506276 | 484.182 |