Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02587 ATGGAACCACCAATGTACGGAAACTCTACGCCCTTGAACATCACCAGAGAAACTGAAGACGGTTCCGGTCCCGATTCCGCCATCGACGGTAACCATCACATTCATTTCGAAACTGTTGACGATGGAAGTGGCGGTTTTGTTGTTGAGGATGTTAACTCCGACGCCGTCTATGGCCACGGCGGTGGAAACTCTGAATTAGCTATTCAACGGTTGGATGATTCTGATCAACTTACGCTTTCTTTTCGTGGTCAAGTTTATGTTTTCGATTCTGTTACGCCTGATAAGGTTCAATCGGTTTTGTTACTGTTGGGTGGATGTGAACAACCACAAGGGGATACATCATATGTGGATCCGGTGCCTCAACAAAGTCAGAGGGAACCAATGGAATATCCAAAATGCAGTCAATCACATCGACAAGCCTCATTAGATAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGAGAAGAAAGTGAGATACGATGTACGTCAAGAAGTTGCACTCAGGATGCAGAGAAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCCAATGGTTGGGGTACAGACCAGGATTCTGGGCAGGATGACAGTCAATCAGAAACCTCTTGCACACATTGTGGCACAAGTTCAAAATCAACCCCGATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTATTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAGGAGACATCACGACCTATCTATTGTACCAGCCGAGCAGGTTGATCAAGGTAATAGCTCAGACTGTGGCACAACAACTATCCCTGCACACAATAGTCTTGCTGCTTTCTCCGAGAATAATAACCAAGCTTTGGTAGCTGATCGTTAA 888 0.4595 MEPPMYGNSTPLNITRETEDGSGPDSAIDGNHHIHFETVDDGSGGFVVEDVNSDAVYGHGGGNSELAIQRLDDSDQLTLSFRGQVYVFDSVTPDKVQSVLLLLGGCEQPQGDTSYVDPVPQQSQREPMEYPKCSQSHRQASLDRFRQKRKERCFEKKVRYDVRQEVALRMQRNKGQFTSSKKQDGANGWGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLYWANRGALRDLSRRHHDLSIVPAEQVDQGNSSDCGTTTIPAHNSLAAFSENNNQALVADR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02587 295 MobiDBLite consensus disorder prediction 171 223 - -
Tsu05g02587 295 CDD ZnF_GATA 205 249 IPR000679 GO:0006355|GO:0043565
Tsu05g02587 295 Pfam GATA zinc finger 206 241 IPR000679 GO:0006355|GO:0043565
Tsu05g02587 295 PANTHER GATA TRANSCRIPTION FACTOR 25 20 272 - -
Tsu05g02587 295 MobiDBLite consensus disorder prediction 1 30 - -
Tsu05g02587 295 PANTHER GATA TRANSCRIPTION FACTOR 28 20 272 IPR045280 GO:0006355
Tsu05g02587 295 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Tsu05g02587 295 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Tsu05g02587 295 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Tsu05g02587 295 Pfam tify domain 74 104 IPR010399 -
Tsu05g02587 295 MobiDBLite consensus disorder prediction 171 219 - -
Tsu05g02587 295 SMART tify_2 70 105 IPR010399 -
Tsu05g02587 295 MobiDBLite consensus disorder prediction 112 141 - -
Tsu05g02587 295 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Tsu05g02587 295 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Tsu05g02587 295 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Tsu05g02587 295 Pfam CCT motif 138 180 IPR010402 GO:0005515
Tsu05g02587 295 MobiDBLite consensus disorder prediction 114 138 - -
Tsu05g02587 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02587 Tsu-Chr5 35238662 35244596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02587 56 294 Tify Gene Family AT4G24470 50.980 8.60e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu05g02587 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02587 - - pvu:PHAVU_008G182900g 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02587 05 35238662 35244596 Tsu05g02587 05 35238662 35244596 ECH
Tsu05g02587 05 35238662 35244596 Tsu07g01065 07 8917912 8922910 PCT