Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02575 ATGGGTGGTGCACCTTCTTTCAAACCATTCAGCATCACATTTTTCCCTTTCTTCCCCATTATCATCGTCACCGTCACCACCACACTCATTCTAATCGCAAGTGCTGAAGATCacaatttaaatgaaaatggaACAATTCATAGTCTCAAAGATGACAATGACATTGCCGCGTCATCACCACCTCCTATATCATCTACGGATAGCTCTGGTCACGTGGCGAAGAAATTAGTTCCATTTAAGCCTAGCACGGCAGTGATAGTAGGTGTTTTAACAACCACATTTTCCCTTGCGTTGCTACTCCTCCTATATGCCAAACATTGCAATAGTGGAAATGTATTTGCTGCTAGCAATGCAAATGTTGATGGGGAATCACGTTTGCACGAGAGGAAGAACTCCGGGATTGATCGTACTATTGTGGAATCATTGCCGGTTTTCAAGTTTGAGTCATTGACAGGACAAAAACATGGACTCGAATGTGCGGTTTGTCTAAATGGGTTTGAGGATCCTGAGGTACTCAGGTTATTGCCAAAATGCAAGCATGCTTTCCACATGGAATGTGTTGACACATGGCTTGACGAACATTCCACATGCCCACTTTGTCGTTATAAGGTGGATCCCAATGACATCAATATTCCTCCGCAACAAAGCGCAGAGGAATCGTTGTCATCTTCAGACATTGAAAGTGGAAGAGTTATTAGTAATATTAACGACAATGTGTCAcaacaagaaaatgaaaatgtagGTTCACAACATGTTTTGGAGAATAGTGATACCTCCTGTAAGGTTGAGGTAGACTCAAATcaaaattctaataataattcTAAAAGTGTAAGGAGCGAGGATGTCACCGGAGAGCATAGGTTAGATCATCGTATAATTTTGTCCCCGGCCTGTTCTGATACTTCACGCAAAGGGGTCCACCAACAATGGAGAAATTTTGAATCGGACGATATGCTTTACCTAAACTCTGATAGGATCATTAGTGATAGTTCCTCTTCACAGTTGAATAGCTTGCATGGGAGAAGGAGAACGATGGTGGAGTGTAATCGCAATCTTGTTGATGATGAGATGGAGAATGGTTTTGGTGGTGGTGGGATGGGTGAGAGGAATTTGAGGACCGTCTCCGAGAGGGTAGGGATGAGTAGATTTTTGAGTAGGGAGAGATGGAGGGAAACAGAGCGTGGTAGTAGGGAAGAACAAGCGCGCCAACGAGAGAGAGTGACTTCAAGGTGGTTGGCATGGATTTCTGGGCCAAAAACACAATGA 1266 0.4202 MGGAPSFKPFSITFFPFFPIIIVTVTTTLILIASAEDHNLNENGTIHSLKDDNDIAASSPPPISSTDSSGHVAKKLVPFKPSTAVIVGVLTTTFSLALLLLLYAKHCNSGNVFAASNANVDGESRLHERKNSGIDRTIVESLPVFKFESLTGQKHGLECAVCLNGFEDPEVLRLLPKCKHAFHMECVDTWLDEHSTCPLCRYKVDPNDINIPPQQSAEESLSSSDIESGRVISNINDNVSQQENENVGSQHVLENSDTSCKVEVDSNQNSNNNSKSVRSEDVTGEHRLDHRIILSPACSDTSRKGVHQQWRNFESDDMLYLNSDRIISDSSSSQLNSLHGRRRTMVECNRNLVDDEMENGFGGGGMGERNLRTVSERVGMSRFLSRERWRETERGSREEQARQRERVTSRWLAWISGPKTQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02575 421 PANTHER RING-H2 FINGER PROTEIN ATL43 51 418 - -
Tsu05g02575 421 Pfam Ring finger domain 158 201 IPR001841 -
Tsu05g02575 421 SMART ring_2 159 200 IPR001841 -
Tsu05g02575 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 209 IPR013083 -
Tsu05g02575 421 MobiDBLite consensus disorder prediction 262 278 - -
Tsu05g02575 421 MobiDBLite consensus disorder prediction 262 283 - -
Tsu05g02575 421 CDD RING-H2_EL5_like 158 201 - -
Tsu05g02575 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 51 418 - -
Tsu05g02575 421 SUPERFAMILY RING/U-box 138 208 - -
Tsu05g02575 421 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02575 Tsu-Chr5 35077146 35078411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02575 79 414 C3H Transcription Factor Family AT5G05810 36.364 3.77e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02575 K19041 - mtr:MTR_5g066250 456.832