Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02568 ATGGTTCCTCCTTTAAGGAGATTCTATGGGTTCGAGAGCTGGCTAGATAAAGATTCAGAAAAAATCAACGGTGAGAAATCAAAATCGGAGAGGAAATCAAGAGAAGCATGTAAGAGTCATAGGGAAGCTGAAAGGAGACGCAGACAGAGAATCAATGCCCATCTCTCCACTCTTCGCTCTCTCCTCCCCAACACCACCAAGTCAGATAAGGCGTCATTGCTAGCGGAAGTGGTGCAGCACGTGAAACGGTTGAGGAAGGAAGCTGATGACGTGGCAAACCGTCACAATGATGAGTCATCGGCTTCATGTAGTGGAGAACCCGGTTCGGTTGATTCTACGGAAGGAGGTGAAACATGGACGTTTCCGGGAGAATCGGATGAGGCGACGGTGAGTTATTGCGGCAGGGAGGAAGGTGAACCAAAGCGGATGAAAGTGACAGTGTGTTGTGAGGATCGACCGGGACTAAACCGGGATCTGACTAAAGCAATCCGGTCGGTTCGGGCAATACCGATTCGAGCAGAGATGATGACTGTTGGAGGAAGGACCAAGAGTGTTATGGTGGTGGAGTGGTGTAAGGGAAAGGGTGGTGGTGATGATGGAAGAGAGGAAAAGGAGGTTGAAGCTTTGGAAAGGGGTTTGAAGGCAGTGATAGAGAATCGGGCTTTTGTTGATTCTAGGATGGGCCCATTTATGTTGGGCCTGAAACGGGCTCGGGAGAGTAATTATGAGGAATGA 735 0.4939 MVPPLRRFYGFESWLDKDSEKINGEKSKSERKSREACKSHREAERRRRQRINAHLSTLRSLLPNTTKSDKASLLAEVVQHVKRLRKEADDVANRHNDESSASCSGEPGSVDSTEGGETWTFPGESDEATVSYCGREEGEPKRMKVTVCCEDRPGLNRDLTKAIRSVRAIPIRAEMMTVGGRTKSVMVVEWCKGKGGGDDGREEKEVEALERGLKAVIENRAFVDSRMGPFMLGLKRARESNYEE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02568 244 PANTHER OS09G0463900 PROTEIN 19 240 - -
Tsu05g02568 244 Pfam Helix-loop-helix DNA-binding domain 37 84 IPR011598 GO:0046983
Tsu05g02568 244 MobiDBLite consensus disorder prediction 89 125 - -
Tsu05g02568 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 92 IPR036638 GO:0046983
Tsu05g02568 244 MobiDBLite consensus disorder prediction 97 119 - -
Tsu05g02568 244 CDD ACT_UUR-ACR-like 145 217 - -
Tsu05g02568 244 PANTHER TRANSCRIPTION FACTOR BHLH30 19 240 IPR045847 GO:0003700|GO:0006355
Tsu05g02568 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Tsu05g02568 244 Coils Coil 74 94 - -
Tsu05g02568 244 Gene3D - 27 96 IPR036638 GO:0046983
Tsu05g02568 244 MobiDBLite consensus disorder prediction 20 50 - -
Tsu05g02568 244 SMART finulus 41 90 IPR011598 GO:0046983
Tsu05g02568 244 SUPERFAMILY ACT-like 141 217 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02568 Tsu-Chr5 34940381 34942121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02568 32 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.796 5.87e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g02568 HLH 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02568 - - gmx:100816394 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02568 05 34940381 34942121 Tsu05g02568 05 34940381 34942121 ECH